FastQCFastQC Report
Wed 12 Dec 2018
H2NL2AFXY_n01_AP1-A09.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameH2NL2AFXY_n01_AP1-A09.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences12641
Sequences flagged as poor quality0
Sequence length76
%GC42

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[FAIL]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
ACCGTAC150.002174045270.070
AGATTAA200.006794322752.55
CCCACGA901.7857735E-423.33333470
GCCCACG1055.066008E-420.069
AGCCCAC1106.9315155E-419.0909168
GAGCCCA1159.3476835E-418.26086867
CGAGCCC1250.001635577316.866
CCGAGCC1450.004404029314.482758565
TCCGAGC1550.00685626413.54838764
Produced by FastQC (version 0.11.5)