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        If you use plots from MultiQC in a publication or presentation, please cite:

        MultiQC: Summarize analysis results for multiple tools and samples in a single report
        Philip Ewels, Måns Magnusson, Sverker Lundin and Max Käller
        Bioinformatics (2016)
        doi: 10.1093/bioinformatics/btw354
        PMID: 27312411

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        About MultiQC

        This report was generated using MultiQC, version 1.9

        You can see a YouTube video describing how to use MultiQC reports here: https://youtu.be/qPbIlO_KWN0

        For more information about MultiQC, including other videos and extensive documentation, please visit http://multiqc.info

        You can report bugs, suggest improvements and find the source code for MultiQC on GitHub: https://github.com/ewels/MultiQC

        MultiQC is published in Bioinformatics:

        MultiQC: Summarize analysis results for multiple tools and samples in a single report
        Philip Ewels, Måns Magnusson, Sverker Lundin and Max Käller
        Bioinformatics (2016)
        doi: 10.1093/bioinformatics/btw354
        PMID: 27312411

        A modular tool to aggregate results from bioinformatics analyses across many samples into a single report.

        Report generated on 2025-01-30, 18:40 based on data in: /scratch/gencore/GENEFLOW/work/nf/30/f779652a946ec8f03c0a799efd3de5/4

        General Statistics

        Showing 378/378 rows and 3/5 columns.
        Sample Name% Dups% GCM Seqs
        H2MF5DSXF_l04_n01_BC1972_POOLRET89
        17.5%
        37%
        12.8
        H2MF5DSXF_l04_n01_BC1977_POOLRET89
        16.9%
        38%
        13.8
        H2MF5DSXF_l04_n01_BC1983_POOLRET89
        17.3%
        37%
        13.6
        H2MF5DSXF_l04_n01_DF5152_POOLRET89
        22.6%
        37%
        14.7
        H2MF5DSXF_l04_n01_ECA2920_POOLRET89
        40.0%
        52%
        33.4
        H2MF5DSXF_l04_n01_ECA2990_POOLRET89
        18.7%
        37%
        19.2
        H2MF5DSXF_l04_n01_ECA3020_POOLRET89
        16.3%
        38%
        12.3
        H2MF5DSXF_l04_n01_ECA3028_POOLRET89
        17.5%
        38%
        14.4
        H2MF5DSXF_l04_n01_ECA3029_POOLRET89
        17.6%
        38%
        12.0
        H2MF5DSXF_l04_n01_ECA3050_POOLRET89
        18.7%
        36%
        22.6
        H2MF5DSXF_l04_n01_ECA3052_POOLRET89
        20.7%
        36%
        28.7
        H2MF5DSXF_l04_n01_ECA3066_POOLRET89
        16.6%
        37%
        11.5
        H2MF5DSXF_l04_n01_ECA3091_POOLRET89
        17.3%
        38%
        12.8
        H2MF5DSXF_l04_n01_ECA3121_POOLRET89
        19.1%
        35%
        25.7
        H2MF5DSXF_l04_n01_ECA3126_POOLRET89
        16.7%
        36%
        16.3
        H2MF5DSXF_l04_n01_ECA3134_POOLRET89
        22.6%
        36%
        28.6
        H2MF5DSXF_l04_n01_ECA3222_POOLRET89
        19.1%
        36%
        22.7
        H2MF5DSXF_l04_n01_ECA3536_POOLRET89
        22.9%
        35%
        42.1
        H2MF5DSXF_l04_n01_ECA3539_POOLRET89
        19.1%
        37%
        17.5
        H2MF5DSXF_l04_n01_ECA3545_POOLRET89
        18.9%
        37%
        20.0
        H2MF5DSXF_l04_n01_ECA3550_POOLRET89
        15.3%
        35%
        9.3
        H2MF5DSXF_l04_n01_ECA3550_POOLRET89_2
        19.7%
        36%
        24.5
        H2MF5DSXF_l04_n01_ECA3708_POOLRET89
        21.4%
        37%
        25.8
        H2MF5DSXF_l04_n01_ECA3710_POOLRET89
        17.9%
        37%
        17.9
        H2MF5DSXF_l04_n01_ECA3712_POOLRET89
        19.8%
        37%
        18.1
        H2MF5DSXF_l04_n01_ECA3713_POOLRET89
        19.7%
        38%
        28.0
        H2MF5DSXF_l04_n01_ECA3891_POOLRET89
        16.2%
        37%
        12.0
        H2MF5DSXF_l04_n01_ECA3898_POOLRET89
        18.0%
        38%
        14.9
        H2MF5DSXF_l04_n01_ECA3899_POOLRET89
        16.8%
        38%
        9.3
        H2MF5DSXF_l04_n01_ECA3900_POOLRET89
        17.0%
        45%
        8.6
        H2MF5DSXF_l04_n01_ECA3901_POOLRET89
        18.1%
        44%
        13.7
        H2MF5DSXF_l04_n01_HPT11_POOLRET89
        16.9%
        38%
        10.9
        H2MF5DSXF_l04_n01_HPT12_POOLRET89
        17.2%
        38%
        13.5
        H2MF5DSXF_l04_n01_HPT13_POOLRET89
        17.2%
        38%
        13.4
        H2MF5DSXF_l04_n01_HPT16_POOLRET89
        17.5%
        37%
        13.6
        H2MF5DSXF_l04_n01_HPT18_POOLRET89
        16.5%
        37%
        12.2
        H2MF5DSXF_l04_n01_HPT19_POOLRET89
        17.6%
        37%
        14.9
        H2MF5DSXF_l04_n01_HPT1_POOLRET89
        18.8%
        38%
        14.0
        H2MF5DSXF_l04_n01_HPT21_POOLRET89
        17.9%
        38%
        16.6
        H2MF5DSXF_l04_n01_HPT22_POOLRET89
        18.1%
        38%
        16.7
        H2MF5DSXF_l04_n01_HPT23_POOLRET89
        15.8%
        38%
        11.2
        H2MF5DSXF_l04_n01_HPT24_POOLRET89
        17.6%
        37%
        13.3
        H2MF5DSXF_l04_n01_HPT25_POOLRET89
        18.9%
        38%
        11.4
        H2MF5DSXF_l04_n01_HPT28_POOLRET89
        17.3%
        37%
        14.9
        H2MF5DSXF_l04_n01_HPT29_POOLRET89
        16.7%
        38%
        11.5
        H2MF5DSXF_l04_n01_HPT2_POOLRET89
        18.3%
        37%
        15.8
        H2MF5DSXF_l04_n01_HPT33_POOLRET89
        16.7%
        37%
        11.6
        H2MF5DSXF_l04_n01_HPT34_POOLRET89
        18.9%
        38%
        17.2
        H2MF5DSXF_l04_n01_HPT34_POOLRET89_2
        21.2%
        37%
        29.8
        H2MF5DSXF_l04_n01_HPT37_POOLRET89
        17.6%
        38%
        14.7
        H2MF5DSXF_l04_n01_HPT39_POOLRET89
        20.6%
        38%
        15.4
        H2MF5DSXF_l04_n01_HPT42_POOLRET89
        17.6%
        38%
        17.5
        H2MF5DSXF_l04_n01_HPT42_POOLRET89_2
        19.1%
        37%
        22.7
        H2MF5DSXF_l04_n01_HPT45_POOLRET89
        17.1%
        38%
        14.8
        H2MF5DSXF_l04_n01_HPT48_POOLRET89
        17.1%
        35%
        13.6
        H2MF5DSXF_l04_n01_HPT4_POOLRET89
        15.9%
        38%
        10.9
        H2MF5DSXF_l04_n01_HPT52_POOLRET89
        16.6%
        38%
        9.6
        H2MF5DSXF_l04_n01_HPT53_POOLRET89
        16.8%
        38%
        12.4
        H2MF5DSXF_l04_n01_HPT54_POOLRET89
        19.3%
        37%
        18.0
        H2MF5DSXF_l04_n01_HPT55_POOLRET89
        16.1%
        38%
        10.7
        H2MF5DSXF_l04_n01_HPT56_POOLRET89
        15.7%
        38%
        10.7
        H2MF5DSXF_l04_n01_HPT58_POOLRET89
        16.4%
        38%
        13.2
        H2MF5DSXF_l04_n01_HPT59_POOLRET89
        16.8%
        38%
        11.1
        H2MF5DSXF_l04_n01_HPT60_POOLRET89
        17.5%
        37%
        10.7
        H2MF5DSXF_l04_n01_HPT60_POOLRET89_2
        21.4%
        37%
        29.1
        H2MF5DSXF_l04_n01_HPT62_POOLRET89
        17.2%
        42%
        10.8
        H2MF5DSXF_l04_n01_HPT63_POOLRET89
        17.5%
        37%
        13.0
        H2MF5DSXF_l04_n01_HPT6_POOLRET89
        20.8%
        37%
        22.6
        H2MF5DSXF_l04_n01_HPT7_POOLRET89
        17.9%
        37%
        11.9
        H2MF5DSXF_l04_n01_HPT8_POOLRET89
        17.9%
        37%
        13.8
        H2MF5DSXF_l04_n01_HPT9_POOLRET89
        17.4%
        37%
        15.7
        H2MF5DSXF_l04_n01_JT10275_POOLRET89
        19.9%
        38%
        15.7
        H2MF5DSXF_l04_n01_JU4210_POOLRET89
        15.6%
        36%
        10.8
        H2MF5DSXF_l04_n01_JU4360_POOLRET89
        19.0%
        37%
        19.4
        H2MF5DSXF_l04_n01_JU4362_POOLRET89
        15.6%
        36%
        9.1
        H2MF5DSXF_l04_n01_JU4365_POOLRET89
        18.2%
        35%
        14.4
        H2MF5DSXF_l04_n01_JU4366_POOLRET89
        18.3%
        36%
        14.1
        H2MF5DSXF_l04_n01_JU4367_POOLRET89
        18.4%
        36%
        14.0
        H2MF5DSXF_l04_n01_JU4377_POOLRET89
        19.7%
        35%
        24.0
        H2MF5DSXF_l04_n01_JU4400_POOLRET89
        19.2%
        37%
        18.3
        H2MF5DSXF_l04_n01_LUA57_POOLRET89
        21.2%
        36%
        28.8
        H2MF5DSXF_l04_n01_LUA93_POOLRET89
        18.4%
        35%
        16.1
        H2MF5DSXF_l04_n01_NIC2093_POOLRET89
        17.7%
        38%
        11.7
        H2MF5DSXF_l04_n01_NIC2097_POOLRET89
        17.2%
        38%
        10.5
        H2MF5DSXF_l04_n01_NIC2098_POOLRET89
        19.2%
        38%
        14.4
        H2MF5DSXF_l04_n01_NIC2103_POOLRET89
        18.4%
        38%
        13.6
        H2MF5DSXF_l04_n01_NIC2112_POOLRET89
        17.9%
        39%
        12.2
        H2MF5DSXF_l04_n01_NIC2190_POOLRET89
        17.3%
        38%
        11.5
        H2MF5DSXF_l04_n01_NIC2193_POOLRET89
        18.0%
        38%
        12.2
        H2MF5DSXF_l04_n01_NIC2195_POOLRET89
        19.4%
        38%
        16.4
        H2MF5DSXF_l04_n01_NIC2197_POOLRET89
        17.1%
        39%
        12.9
        H2MF5DSXF_l04_n01_NIC2360_POOLRET89
        20.4%
        37%
        22.0
        H2MF5DSXF_l04_n01_NIC2369_POOLRET89
        16.5%
        37%
        11.8
        H2MF5DSXF_l04_n01_NIC2553_POOLRET89
        0.7%
        28%
        0.0
        H2MF5DSXF_l04_n01_NIC2553_POOLRET89_2
        21.4%
        36%
        28.2
        H2MF5DSXF_l04_n01_NIC2554_POOLRET89
        15.9%
        36%
        11.3
        H2MF5DSXF_l04_n01_NIC2555_POOLRET89
        20.6%
        38%
        26.1
        H2MF5DSXF_l04_n01_NIC2556_POOLRET89
        18.5%
        38%
        13.9
        H2MF5DSXF_l04_n01_NIC2557_POOLRET89
        18.0%
        37%
        15.1
        H2MF5DSXF_l04_n01_NIC2558_POOLRET89
        17.6%
        35%
        16.6
        H2MF5DSXF_l04_n01_NIC2559_POOLRET89
        18.1%
        35%
        14.8
        H2MF5DSXF_l04_n01_NIC2560_POOLRET89
        16.7%
        38%
        10.2
        H2MF5DSXF_l04_n01_NIC2561_POOLRET89
        16.3%
        36%
        11.7
        H2MF5DSXF_l04_n01_NIC2562_POOLRET89
        18.4%
        35%
        15.2
        H2MF5DSXF_l04_n01_NIC2563_POOLRET89
        19.3%
        38%
        16.9
        H2MF5DSXF_l04_n01_NIC2564_POOLRET89
        15.5%
        35%
        10.3
        H2MF5DSXF_l04_n01_NIC2565_POOLRET89
        17.6%
        36%
        15.0
        H2MF5DSXF_l04_n01_NIC2566_POOLRET89
        18.9%
        36%
        14.5
        H2MF5DSXF_l04_n01_NIC2567_POOLRET89
        19.1%
        36%
        19.6
        H2MF5DSXF_l04_n01_NIC2568_POOLRET89
        17.9%
        37%
        14.3
        H2MF5DSXF_l04_n01_NIC2569_POOLRET89
        9.0%
        34%
        0.0
        H2MF5DSXF_l04_n01_NIC2569_POOLRET89_2
        22.6%
        37%
        32.5
        H2MF5DSXF_l04_n01_NIC2570_POOLRET89
        17.6%
        36%
        11.9
        H2MF5DSXF_l04_n01_NIC2571_POOLRET89
        15.7%
        35%
        11.3
        H2MF5DSXF_l04_n01_NIC2572_POOLRET89
        16.5%
        35%
        12.4
        H2MF5DSXF_l04_n01_NIC2573_POOLRET89
        18.3%
        35%
        20.7
        H2MF5DSXF_l04_n01_NIC2574_POOLRET89
        17.3%
        36%
        15.7
        H2MF5DSXF_l04_n01_NIC2575_POOLRET89
        17.8%
        38%
        12.7
        H2MF5DSXF_l04_n01_NIC2576_POOLRET89
        18.1%
        36%
        14.8
        H2MF5DSXF_l04_n01_NIC2577_POOLRET89
        17.8%
        45%
        10.3
        H2MF5DSXF_l04_n01_PS9148_POOLRET89
        16.3%
        38%
        13.3
        H2MF5DSXF_l04_n01_PS9334_POOLRET89
        16.3%
        38%
        10.7
        H2MF5DSXF_l04_n01_QG3523_POOLRET89
        19.9%
        38%
        14.6
        H2MF5DSXF_l04_n01_QG4706_POOLRET89
        21.9%
        37%
        29.9
        H2MF5DSXF_l04_n01_QG4718_POOLRET89
        21.2%
        37%
        25.1
        H2MF5DSXF_l04_n01_QG4878_POOLRET89
        17.0%
        38%
        11.5
        H2MF5DSXF_l04_n01_QG4944_POOLRET89
        18.7%
        37%
        11.7
        H2MF5DSXF_l04_n01_QG4953_POOLRET89
        19.4%
        37%
        16.8
        H2MF5DSXF_l04_n01_QG5314_POOLRET89
        16.8%
        37%
        13.9
        H2MF5DSXF_l04_n01_QG5348_POOLRET89
        18.5%
        37%
        19.9
        H2MF5DSXF_l04_n01_QG5578_POOLRET89
        2.5%
        31%
        0.0
        H2MF5DSXF_l04_n01_QG5578_POOLRET89_2
        20.8%
        38%
        24.8
        H2MF5DSXF_l04_n01_QG5579_POOLRET89
        17.0%
        37%
        13.6
        H2MF5DSXF_l04_n01_QG5580_POOLRET89
        16.3%
        38%
        11.7
        H2MF5DSXF_l04_n01_QG5581_POOLRET89
        16.5%
        38%
        11.4
        H2MF5DSXF_l04_n01_QG5582_POOLRET89
        16.3%
        38%
        13.5
        H2MF5DSXF_l04_n01_QG5588_POOLRET89
        17.4%
        38%
        12.6
        H2MF5DSXF_l04_n01_QG5589_POOLRET89
        16.6%
        37%
        12.9
        H2MF5DSXF_l04_n01_QG5602_POOLRET89
        18.0%
        38%
        13.7
        H2MF5DSXF_l04_n01_QG5603_POOLRET89
        18.1%
        38%
        16.5
        H2MF5DSXF_l04_n01_QG5604_POOLRET89
        17.0%
        37%
        13.2
        H2MF5DSXF_l04_n01_QG5611_POOLRET89
        16.6%
        37%
        13.6
        H2MF5DSXF_l04_n01_QG5612_POOLRET89
        18.5%
        38%
        14.0
        H2MF5DSXF_l04_n01_QG5628_POOLRET89
        16.2%
        38%
        10.5
        H2MF5DSXF_l04_n01_QG5629_POOLRET89
        17.9%
        37%
        15.4
        H2MF5DSXF_l04_n01_QG5631_POOLRET89
        15.5%
        37%
        10.6
        H2MF5DSXF_l04_n01_QG5632_POOLRET89
        17.6%
        38%
        14.8
        H2MF5DSXF_l04_n01_QG5633_POOLRET89
        19.2%
        38%
        24.9
        H2MF5DSXF_l04_n01_QG5638_POOLRET89
        18.5%
        37%
        15.5
        H2MF5DSXF_l04_n01_QG5638_POOLRET89_2
        22.9%
        37%
        30.1
        H2MF5DSXF_l04_n01_QG5643_POOLRET89
        17.1%
        38%
        9.5
        H2MF5DSXF_l04_n01_QG5650_POOLRET89
        17.1%
        37%
        13.6
        H2MF5DSXF_l04_n01_QG5652_POOLRET89
        17.2%
        37%
        14.7
        H2MF5DSXF_l04_n01_QG5654_POOLRET89
        17.5%
        38%
        15.6
        H2MF5DSXF_l04_n01_QG5655_POOLRET89
        16.6%
        37%
        12.0
        H2MF5DSXF_l04_n01_QG5657_POOLRET89
        15.5%
        38%
        10.5
        H2MF5DSXF_l04_n01_QG789_POOLRET89
        47.1%
        62%
        29.0
        H2MF5DSXF_l04_n01_SOW21_POOLRET89
        16.4%
        38%
        11.8
        H2MF5DSXF_l04_n01_SOW22_POOLRET89
        16.8%
        38%
        12.3
        H2MF5DSXF_l04_n01_SSD24_POOLRET89
        17.2%
        36%
        11.6
        H2MF5DSXF_l04_n01_SSD25_POOLRET89
        21.2%
        37%
        23.4
        H2MF5DSXF_l04_n01_SSD26_POOLRET89
        18.8%
        36%
        12.9
        H2MF5DSXF_l04_n01_SSD27_POOLRET89
        18.8%
        35%
        13.0
        H2MF5DSXF_l04_n01_SSD28_POOLRET89
        17.5%
        36%
        10.4
        H2MF5DSXF_l04_n01_SSD29_POOLRET89
        20.0%
        37%
        15.8
        H2MF5DSXF_l04_n01_SSD30_POOLRET89
        17.6%
        37%
        12.5
        H2MF5DSXF_l04_n01_SSD31_POOLRET89
        18.3%
        37%
        13.2
        H2MF5DSXF_l04_n01_SSD32_POOLRET89
        19.9%
        36%
        24.9
        H2MF5DSXF_l04_n01_SSD33_POOLRET89
        18.9%
        37%
        12.0
        H2MF5DSXF_l04_n01_SSD34_POOLRET89
        17.5%
        36%
        11.4
        H2MF5DSXF_l04_n01_SSD35_POOLRET89
        18.6%
        36%
        13.2
        H2MF5DSXF_l04_n01_SSD36_POOLRET89
        18.5%
        36%
        14.4
        H2MF5DSXF_l04_n01_SSD37_POOLRET89
        18.7%
        36%
        13.0
        H2MF5DSXF_l04_n01_SSD38_POOLRET89
        18.1%
        36%
        12.9
        H2MF5DSXF_l04_n01_SSD39_POOLRET89
        16.1%
        36%
        9.7
        H2MF5DSXF_l04_n01_WN2174_POOLRET89
        22.2%
        35%
        31.4
        H2MF5DSXF_l04_n01_WN2176_POOLRET89
        20.4%
        38%
        22.5
        H2MF5DSXF_l04_n01_WN2185_POOLRET89
        22.3%
        44%
        24.6
        H2MF5DSXF_l04_n01_WN2192_POOLRET89
        21.0%
        36%
        30.1
        H2MF5DSXF_l04_n01_WN2196_POOLRET89
        19.2%
        35%
        25.7
        H2MF5DSXF_l04_n01_WN2205_POOLRET89
        18.6%
        36%
        21.2
        H2MF5DSXF_l04_n01_WN2206_POOLRET89
        20.5%
        36%
        29.4
        H2MF5DSXF_l04_n01_WN2212_POOLRET89
        20.4%
        35%
        27.1
        H2MF5DSXF_l04_n01_ZZY0992_POOLRET89
        18.1%
        38%
        16.1
        H2MF5DSXF_l04_n01_ZZY1034_POOLRET89
        18.6%
        38%
        10.4
        H2MF5DSXF_l04_n01_ZZY1075_POOLRET89
        17.7%
        38%
        11.5
        H2MF5DSXF_l04_n01_ZZY1123_POOLRET89
        16.5%
        38%
        10.3
        H2MF5DSXF_l04_n01_ZZY1130_POOLRET89
        15.7%
        38%
        10.0
        H2MF5DSXF_l04_n01_undetermined
        69.5%
        42%
        257.4
        H2MF5DSXF_l04_n02_BC1972_POOLRET89
        17.0%
        37%
        12.8
        H2MF5DSXF_l04_n02_BC1977_POOLRET89
        16.8%
        38%
        13.8
        H2MF5DSXF_l04_n02_BC1983_POOLRET89
        17.1%
        37%
        13.6
        H2MF5DSXF_l04_n02_DF5152_POOLRET89
        21.9%
        37%
        14.7
        H2MF5DSXF_l04_n02_ECA2920_POOLRET89
        37.7%
        52%
        33.4
        H2MF5DSXF_l04_n02_ECA2990_POOLRET89
        18.4%
        37%
        19.2
        H2MF5DSXF_l04_n02_ECA3020_POOLRET89
        16.0%
        38%
        12.3
        H2MF5DSXF_l04_n02_ECA3028_POOLRET89
        17.2%
        38%
        14.4
        H2MF5DSXF_l04_n02_ECA3029_POOLRET89
        17.2%
        38%
        12.0
        H2MF5DSXF_l04_n02_ECA3050_POOLRET89
        18.5%
        36%
        22.6
        H2MF5DSXF_l04_n02_ECA3052_POOLRET89
        20.2%
        36%
        28.7
        H2MF5DSXF_l04_n02_ECA3066_POOLRET89
        16.3%
        37%
        11.5
        H2MF5DSXF_l04_n02_ECA3091_POOLRET89
        16.8%
        38%
        12.8
        H2MF5DSXF_l04_n02_ECA3121_POOLRET89
        18.6%
        35%
        25.7
        H2MF5DSXF_l04_n02_ECA3126_POOLRET89
        16.4%
        36%
        16.3
        H2MF5DSXF_l04_n02_ECA3134_POOLRET89
        21.9%
        36%
        28.6
        H2MF5DSXF_l04_n02_ECA3222_POOLRET89
        18.8%
        36%
        22.7
        H2MF5DSXF_l04_n02_ECA3536_POOLRET89
        22.4%
        35%
        42.1
        H2MF5DSXF_l04_n02_ECA3539_POOLRET89
        18.1%
        37%
        17.5
        H2MF5DSXF_l04_n02_ECA3545_POOLRET89
        18.3%
        37%
        20.0
        H2MF5DSXF_l04_n02_ECA3550_POOLRET89
        14.9%
        35%
        9.3
        H2MF5DSXF_l04_n02_ECA3550_POOLRET89_2
        19.0%
        36%
        24.5
        H2MF5DSXF_l04_n02_ECA3708_POOLRET89
        20.2%
        37%
        25.8
        H2MF5DSXF_l04_n02_ECA3710_POOLRET89
        17.2%
        37%
        17.9
        H2MF5DSXF_l04_n02_ECA3712_POOLRET89
        18.9%
        37%
        18.1
        H2MF5DSXF_l04_n02_ECA3713_POOLRET89
        19.4%
        38%
        28.0
        H2MF5DSXF_l04_n02_ECA3891_POOLRET89
        16.0%
        37%
        12.0
        H2MF5DSXF_l04_n02_ECA3898_POOLRET89
        17.6%
        38%
        14.9
        H2MF5DSXF_l04_n02_ECA3899_POOLRET89
        16.5%
        38%
        9.3
        H2MF5DSXF_l04_n02_ECA3900_POOLRET89
        16.6%
        45%
        8.6
        H2MF5DSXF_l04_n02_ECA3901_POOLRET89
        17.5%
        44%
        13.7
        H2MF5DSXF_l04_n02_HPT11_POOLRET89
        16.6%
        38%
        10.9
        H2MF5DSXF_l04_n02_HPT12_POOLRET89
        16.4%
        38%
        13.5
        H2MF5DSXF_l04_n02_HPT13_POOLRET89
        16.6%
        38%
        13.4
        H2MF5DSXF_l04_n02_HPT16_POOLRET89
        17.1%
        37%
        13.6
        H2MF5DSXF_l04_n02_HPT18_POOLRET89
        16.3%
        37%
        12.2
        H2MF5DSXF_l04_n02_HPT19_POOLRET89
        16.8%
        37%
        14.9
        H2MF5DSXF_l04_n02_HPT1_POOLRET89
        18.0%
        38%
        14.0
        H2MF5DSXF_l04_n02_HPT21_POOLRET89
        17.6%
        38%
        16.6
        H2MF5DSXF_l04_n02_HPT22_POOLRET89
        17.4%
        38%
        16.7
        H2MF5DSXF_l04_n02_HPT23_POOLRET89
        15.6%
        38%
        11.2
        H2MF5DSXF_l04_n02_HPT24_POOLRET89
        16.9%
        37%
        13.3
        H2MF5DSXF_l04_n02_HPT25_POOLRET89
        18.3%
        38%
        11.4
        H2MF5DSXF_l04_n02_HPT28_POOLRET89
        16.7%
        37%
        14.9
        H2MF5DSXF_l04_n02_HPT29_POOLRET89
        16.4%
        38%
        11.5
        H2MF5DSXF_l04_n02_HPT2_POOLRET89
        18.0%
        37%
        15.8
        H2MF5DSXF_l04_n02_HPT33_POOLRET89
        16.5%
        37%
        11.6
        H2MF5DSXF_l04_n02_HPT34_POOLRET89
        17.9%
        38%
        17.2
        H2MF5DSXF_l04_n02_HPT34_POOLRET89_2
        20.6%
        37%
        29.8
        H2MF5DSXF_l04_n02_HPT37_POOLRET89
        17.2%
        38%
        14.7
        H2MF5DSXF_l04_n02_HPT39_POOLRET89
        20.3%
        38%
        15.4
        H2MF5DSXF_l04_n02_HPT42_POOLRET89
        17.0%
        38%
        17.5
        H2MF5DSXF_l04_n02_HPT42_POOLRET89_2
        18.7%
        37%
        22.7
        H2MF5DSXF_l04_n02_HPT45_POOLRET89
        16.5%
        38%
        14.8
        H2MF5DSXF_l04_n02_HPT48_POOLRET89
        16.6%
        35%
        13.6
        H2MF5DSXF_l04_n02_HPT4_POOLRET89
        14.9%
        38%
        10.9
        H2MF5DSXF_l04_n02_HPT52_POOLRET89
        16.0%
        38%
        9.6
        H2MF5DSXF_l04_n02_HPT53_POOLRET89
        16.4%
        38%
        12.4
        H2MF5DSXF_l04_n02_HPT54_POOLRET89
        18.9%
        37%
        18.0
        H2MF5DSXF_l04_n02_HPT55_POOLRET89
        15.8%
        38%
        10.7
        H2MF5DSXF_l04_n02_HPT56_POOLRET89
        15.5%
        38%
        10.7
        H2MF5DSXF_l04_n02_HPT58_POOLRET89
        15.6%
        38%
        13.2
        H2MF5DSXF_l04_n02_HPT59_POOLRET89
        16.7%
        38%
        11.1
        H2MF5DSXF_l04_n02_HPT60_POOLRET89
        17.3%
        37%
        10.7
        H2MF5DSXF_l04_n02_HPT60_POOLRET89_2
        20.2%
        37%
        29.1
        H2MF5DSXF_l04_n02_HPT62_POOLRET89
        16.8%
        42%
        10.8
        H2MF5DSXF_l04_n02_HPT63_POOLRET89
        17.2%
        37%
        13.0
        H2MF5DSXF_l04_n02_HPT6_POOLRET89
        20.2%
        37%
        22.6
        H2MF5DSXF_l04_n02_HPT7_POOLRET89
        17.4%
        37%
        11.9
        H2MF5DSXF_l04_n02_HPT8_POOLRET89
        17.6%
        37%
        13.8
        H2MF5DSXF_l04_n02_HPT9_POOLRET89
        17.1%
        37%
        15.7
        H2MF5DSXF_l04_n02_JT10275_POOLRET89
        19.4%
        38%
        15.7
        H2MF5DSXF_l04_n02_JU4210_POOLRET89
        15.3%
        36%
        10.8
        H2MF5DSXF_l04_n02_JU4360_POOLRET89
        18.0%
        37%
        19.4
        H2MF5DSXF_l04_n02_JU4362_POOLRET89
        15.4%
        36%
        9.1
        H2MF5DSXF_l04_n02_JU4365_POOLRET89
        17.9%
        35%
        14.4
        H2MF5DSXF_l04_n02_JU4366_POOLRET89
        17.5%
        36%
        14.1
        H2MF5DSXF_l04_n02_JU4367_POOLRET89
        17.1%
        36%
        14.0
        H2MF5DSXF_l04_n02_JU4377_POOLRET89
        19.2%
        35%
        24.0
        H2MF5DSXF_l04_n02_JU4400_POOLRET89
        18.6%
        37%
        18.3
        H2MF5DSXF_l04_n02_LUA57_POOLRET89
        20.3%
        36%
        28.8
        H2MF5DSXF_l04_n02_LUA93_POOLRET89
        18.1%
        35%
        16.1
        H2MF5DSXF_l04_n02_NIC2093_POOLRET89
        17.4%
        38%
        11.7
        H2MF5DSXF_l04_n02_NIC2097_POOLRET89
        16.9%
        38%
        10.5
        H2MF5DSXF_l04_n02_NIC2098_POOLRET89
        18.9%
        38%
        14.4
        H2MF5DSXF_l04_n02_NIC2103_POOLRET89
        17.7%
        38%
        13.6
        H2MF5DSXF_l04_n02_NIC2112_POOLRET89
        17.5%
        39%
        12.2
        H2MF5DSXF_l04_n02_NIC2190_POOLRET89
        16.8%
        38%
        11.5
        H2MF5DSXF_l04_n02_NIC2193_POOLRET89
        17.5%
        38%
        12.2
        H2MF5DSXF_l04_n02_NIC2195_POOLRET89
        18.7%
        38%
        16.4
        H2MF5DSXF_l04_n02_NIC2197_POOLRET89
        16.7%
        39%
        12.9
        H2MF5DSXF_l04_n02_NIC2360_POOLRET89
        19.8%
        37%
        22.0
        H2MF5DSXF_l04_n02_NIC2369_POOLRET89
        16.0%
        37%
        11.8
        H2MF5DSXF_l04_n02_NIC2553_POOLRET89
        2.1%
        31%
        0.0
        H2MF5DSXF_l04_n02_NIC2553_POOLRET89_2
        21.0%
        36%
        28.2
        H2MF5DSXF_l04_n02_NIC2554_POOLRET89
        15.5%
        36%
        11.3
        H2MF5DSXF_l04_n02_NIC2555_POOLRET89
        20.1%
        38%
        26.1
        H2MF5DSXF_l04_n02_NIC2556_POOLRET89
        17.9%
        38%
        13.9
        H2MF5DSXF_l04_n02_NIC2557_POOLRET89
        17.6%
        37%
        15.1
        H2MF5DSXF_l04_n02_NIC2558_POOLRET89
        17.3%
        35%
        16.6
        H2MF5DSXF_l04_n02_NIC2559_POOLRET89
        17.5%
        35%
        14.8
        H2MF5DSXF_l04_n02_NIC2560_POOLRET89
        16.3%
        38%
        10.2
        H2MF5DSXF_l04_n02_NIC2561_POOLRET89
        16.0%
        36%
        11.7
        H2MF5DSXF_l04_n02_NIC2562_POOLRET89
        18.0%
        35%
        15.2
        H2MF5DSXF_l04_n02_NIC2563_POOLRET89
        19.0%
        38%
        16.9
        H2MF5DSXF_l04_n02_NIC2564_POOLRET89
        15.3%
        35%
        10.3
        H2MF5DSXF_l04_n02_NIC2565_POOLRET89
        17.2%
        36%
        15.0
        H2MF5DSXF_l04_n02_NIC2566_POOLRET89
        18.3%
        36%
        14.5
        H2MF5DSXF_l04_n02_NIC2567_POOLRET89
        18.2%
        36%
        19.6
        H2MF5DSXF_l04_n02_NIC2568_POOLRET89
        17.5%
        37%
        14.3
        H2MF5DSXF_l04_n02_NIC2569_POOLRET89
        8.3%
        34%
        0.0
        H2MF5DSXF_l04_n02_NIC2569_POOLRET89_2
        21.9%
        37%
        32.5
        H2MF5DSXF_l04_n02_NIC2570_POOLRET89
        17.3%
        36%
        11.9
        H2MF5DSXF_l04_n02_NIC2571_POOLRET89
        15.4%
        35%
        11.3
        H2MF5DSXF_l04_n02_NIC2572_POOLRET89
        16.4%
        35%
        12.4
        H2MF5DSXF_l04_n02_NIC2573_POOLRET89
        17.8%
        35%
        20.7
        H2MF5DSXF_l04_n02_NIC2574_POOLRET89
        17.0%
        35%
        15.7
        H2MF5DSXF_l04_n02_NIC2575_POOLRET89
        17.5%
        38%
        12.7
        H2MF5DSXF_l04_n02_NIC2576_POOLRET89
        17.8%
        36%
        14.8
        H2MF5DSXF_l04_n02_NIC2577_POOLRET89
        17.1%
        45%
        10.3
        H2MF5DSXF_l04_n02_PS9148_POOLRET89
        16.1%
        38%
        13.3
        H2MF5DSXF_l04_n02_PS9334_POOLRET89
        15.9%
        38%
        10.7
        H2MF5DSXF_l04_n02_QG3523_POOLRET89
        19.5%
        38%
        14.6
        H2MF5DSXF_l04_n02_QG4706_POOLRET89
        21.4%
        37%
        29.9
        H2MF5DSXF_l04_n02_QG4718_POOLRET89
        20.6%
        37%
        25.1
        H2MF5DSXF_l04_n02_QG4878_POOLRET89
        16.4%
        38%
        11.5
        H2MF5DSXF_l04_n02_QG4944_POOLRET89
        18.1%
        37%
        11.7
        H2MF5DSXF_l04_n02_QG4953_POOLRET89
        18.9%
        37%
        16.8
        H2MF5DSXF_l04_n02_QG5314_POOLRET89
        15.5%
        37%
        13.9
        H2MF5DSXF_l04_n02_QG5348_POOLRET89
        18.2%
        37%
        19.9
        H2MF5DSXF_l04_n02_QG5578_POOLRET89
        3.2%
        32%
        0.0
        H2MF5DSXF_l04_n02_QG5578_POOLRET89_2
        20.2%
        38%
        24.8
        H2MF5DSXF_l04_n02_QG5579_POOLRET89
        16.5%
        37%
        13.6
        H2MF5DSXF_l04_n02_QG5580_POOLRET89
        15.7%
        38%
        11.7
        H2MF5DSXF_l04_n02_QG5581_POOLRET89
        15.9%
        38%
        11.4
        H2MF5DSXF_l04_n02_QG5582_POOLRET89
        15.7%
        38%
        13.5
        H2MF5DSXF_l04_n02_QG5588_POOLRET89
        16.9%
        38%
        12.6
        H2MF5DSXF_l04_n02_QG5589_POOLRET89
        16.1%
        37%
        12.9
        H2MF5DSXF_l04_n02_QG5602_POOLRET89
        17.2%
        38%
        13.7
        H2MF5DSXF_l04_n02_QG5603_POOLRET89
        17.5%
        38%
        16.5
        H2MF5DSXF_l04_n02_QG5604_POOLRET89
        16.5%
        37%
        13.2
        H2MF5DSXF_l04_n02_QG5611_POOLRET89
        16.0%
        37%
        13.6
        H2MF5DSXF_l04_n02_QG5612_POOLRET89
        18.2%
        38%
        14.0
        H2MF5DSXF_l04_n02_QG5628_POOLRET89
        15.7%
        38%
        10.5
        H2MF5DSXF_l04_n02_QG5629_POOLRET89
        17.3%
        37%
        15.4
        H2MF5DSXF_l04_n02_QG5631_POOLRET89
        15.0%
        37%
        10.6
        H2MF5DSXF_l04_n02_QG5632_POOLRET89
        17.2%
        38%
        14.8
        H2MF5DSXF_l04_n02_QG5633_POOLRET89
        18.7%
        38%
        24.9
        H2MF5DSXF_l04_n02_QG5638_POOLRET89
        18.2%
        37%
        15.5
        H2MF5DSXF_l04_n02_QG5638_POOLRET89_2
        22.0%
        37%
        30.1
        H2MF5DSXF_l04_n02_QG5643_POOLRET89
        16.6%
        38%
        9.5
        H2MF5DSXF_l04_n02_QG5650_POOLRET89
        16.8%
        37%
        13.6
        H2MF5DSXF_l04_n02_QG5652_POOLRET89
        16.7%
        37%
        14.7
        H2MF5DSXF_l04_n02_QG5654_POOLRET89
        17.0%
        38%
        15.6
        H2MF5DSXF_l04_n02_QG5655_POOLRET89
        16.3%
        37%
        12.0
        H2MF5DSXF_l04_n02_QG5657_POOLRET89
        15.1%
        38%
        10.5
        H2MF5DSXF_l04_n02_QG789_POOLRET89
        45.5%
        62%
        29.0
        H2MF5DSXF_l04_n02_SOW21_POOLRET89
        16.1%
        38%
        11.8
        H2MF5DSXF_l04_n02_SOW22_POOLRET89
        16.3%
        38%
        12.3
        H2MF5DSXF_l04_n02_SSD24_POOLRET89
        16.5%
        36%
        11.6
        H2MF5DSXF_l04_n02_SSD25_POOLRET89
        20.4%
        37%
        23.4
        H2MF5DSXF_l04_n02_SSD26_POOLRET89
        18.7%
        36%
        12.9
        H2MF5DSXF_l04_n02_SSD27_POOLRET89
        18.3%
        35%
        13.0
        H2MF5DSXF_l04_n02_SSD28_POOLRET89
        17.2%
        36%
        10.4
        H2MF5DSXF_l04_n02_SSD29_POOLRET89
        18.9%
        37%
        15.8
        H2MF5DSXF_l04_n02_SSD30_POOLRET89
        17.3%
        36%
        12.5
        H2MF5DSXF_l04_n02_SSD31_POOLRET89
        17.9%
        37%
        13.2
        H2MF5DSXF_l04_n02_SSD32_POOLRET89
        19.0%
        36%
        24.9
        H2MF5DSXF_l04_n02_SSD33_POOLRET89
        18.4%
        37%
        12.0
        H2MF5DSXF_l04_n02_SSD34_POOLRET89
        17.2%
        36%
        11.4
        H2MF5DSXF_l04_n02_SSD35_POOLRET89
        18.1%
        36%
        13.2
        H2MF5DSXF_l04_n02_SSD36_POOLRET89
        18.1%
        36%
        14.4
        H2MF5DSXF_l04_n02_SSD37_POOLRET89
        18.1%
        36%
        13.0
        H2MF5DSXF_l04_n02_SSD38_POOLRET89
        17.7%
        36%
        12.9
        H2MF5DSXF_l04_n02_SSD39_POOLRET89
        15.9%
        36%
        9.7
        H2MF5DSXF_l04_n02_WN2174_POOLRET89
        21.1%
        35%
        31.4
        H2MF5DSXF_l04_n02_WN2176_POOLRET89
        19.8%
        38%
        22.5
        H2MF5DSXF_l04_n02_WN2185_POOLRET89
        21.3%
        44%
        24.6
        H2MF5DSXF_l04_n02_WN2192_POOLRET89
        20.2%
        36%
        30.1
        H2MF5DSXF_l04_n02_WN2196_POOLRET89
        18.6%
        35%
        25.7
        H2MF5DSXF_l04_n02_WN2205_POOLRET89
        18.4%
        36%
        21.2
        H2MF5DSXF_l04_n02_WN2206_POOLRET89
        20.0%
        36%
        29.4
        H2MF5DSXF_l04_n02_WN2212_POOLRET89
        19.8%
        35%
        27.1
        H2MF5DSXF_l04_n02_ZZY0992_POOLRET89
        18.0%
        38%
        16.1
        H2MF5DSXF_l04_n02_ZZY1034_POOLRET89
        18.3%
        38%
        10.4
        H2MF5DSXF_l04_n02_ZZY1075_POOLRET89
        17.0%
        38%
        11.5
        H2MF5DSXF_l04_n02_ZZY1123_POOLRET89
        16.2%
        38%
        10.3
        H2MF5DSXF_l04_n02_ZZY1130_POOLRET89
        15.2%
        38%
        10.0
        H2MF5DSXF_l04_n02_undetermined
        67.8%
        42%
        257.4

        Demultiplexing Report


        Total Read Count: Total number of PF (Passing Filter) reads in this library.
        Portion: The proportion of reads that represent the individual library in the entire Library Pool.

        Showing 189/189 rows and 2/2 columns.
        LibraryTotal Read CountPortion (%)
        BC1972_POOLRET89
        12847691
        0.4
        BC1977_POOLRET89
        13808946
        0.4
        BC1983_POOLRET89
        13559940
        0.4
        DF5152_POOLRET89
        14728742
        0.5
        ECA2920_POOLRET89
        33409262
        1.0
        ECA2990_POOLRET89
        19243324
        0.6
        ECA3020_POOLRET89
        12308145
        0.4
        ECA3028_POOLRET89
        14447408
        0.4
        ECA3029_POOLRET89
        11970760
        0.4
        ECA3050_POOLRET89
        22624072
        0.7
        ECA3052_POOLRET89
        28729148
        0.9
        ECA3066_POOLRET89
        11546023
        0.4
        ECA3091_POOLRET89
        12838627
        0.4
        ECA3121_POOLRET89
        25708001
        0.8
        ECA3126_POOLRET89
        16298679
        0.5
        ECA3134_POOLRET89
        28562463
        0.9
        ECA3222_POOLRET89
        22711931
        0.7
        ECA3536_POOLRET89
        42123421
        1.3
        ECA3539_POOLRET89
        17512275
        0.5
        ECA3545_POOLRET89
        20035129
        0.6
        ECA3550_POOLRET89
        9287023
        0.3
        ECA3550_POOLRET89_2
        24462212
        0.8
        ECA3708_POOLRET89
        25824172
        0.8
        ECA3710_POOLRET89
        17948820
        0.6
        ECA3712_POOLRET89
        18131553
        0.6
        ECA3713_POOLRET89
        27965086
        0.9
        ECA3891_POOLRET89
        11957667
        0.4
        ECA3898_POOLRET89
        14877121
        0.5
        ECA3899_POOLRET89
        9305540
        0.3
        ECA3900_POOLRET89
        8560097
        0.3
        ECA3901_POOLRET89
        13703597
        0.4
        HPT11_POOLRET89
        10892129
        0.3
        HPT12_POOLRET89
        13515887
        0.4
        HPT13_POOLRET89
        13419399
        0.4
        HPT16_POOLRET89
        13580632
        0.4
        HPT18_POOLRET89
        12183775
        0.4
        HPT19_POOLRET89
        14940439
        0.5
        HPT1_POOLRET89
        14048586
        0.4
        HPT21_POOLRET89
        16557549
        0.5
        HPT22_POOLRET89
        16724640
        0.5
        HPT23_POOLRET89
        11217549
        0.3
        HPT24_POOLRET89
        13271504
        0.4
        HPT25_POOLRET89
        11354568
        0.4
        HPT28_POOLRET89
        14931265
        0.5
        HPT29_POOLRET89
        11457829
        0.4
        HPT2_POOLRET89
        15841647
        0.5
        HPT33_POOLRET89
        11610687
        0.4
        HPT34_POOLRET89
        17168818
        0.5
        HPT34_POOLRET89_2
        29752764
        0.9
        HPT37_POOLRET89
        14651681
        0.5
        HPT39_POOLRET89
        15396375
        0.5
        HPT42_POOLRET89
        17472308
        0.5
        HPT42_POOLRET89_2
        22700350
        0.7
        HPT45_POOLRET89
        14774131
        0.5
        HPT48_POOLRET89
        13557411
        0.4
        HPT4_POOLRET89
        10880290
        0.3
        HPT52_POOLRET89
        9610436
        0.3
        HPT53_POOLRET89
        12355074
        0.4
        HPT54_POOLRET89
        18022896
        0.6
        HPT55_POOLRET89
        10675354
        0.3
        HPT56_POOLRET89
        10725654
        0.3
        HPT58_POOLRET89
        13158457
        0.4
        HPT59_POOLRET89
        11129020
        0.3
        HPT60_POOLRET89
        10668510
        0.3
        HPT60_POOLRET89_2
        29056573
        0.9
        HPT62_POOLRET89
        10774789
        0.3
        HPT63_POOLRET89
        13015067
        0.4
        HPT6_POOLRET89
        22577070
        0.7
        HPT7_POOLRET89
        11871691
        0.4
        HPT8_POOLRET89
        13776436
        0.4
        HPT9_POOLRET89
        15679864
        0.5
        JT10275_POOLRET89
        15675510
        0.5
        JU4210_POOLRET89
        10847854
        0.3
        JU4360_POOLRET89
        19393329
        0.6
        JU4362_POOLRET89
        9111586
        0.3
        JU4365_POOLRET89
        14441951
        0.4
        JU4366_POOLRET89
        14128411
        0.4
        JU4367_POOLRET89
        14042437
        0.4
        JU4377_POOLRET89
        23977754
        0.7
        JU4400_POOLRET89
        18323425
        0.6
        LUA57_POOLRET89
        28833144
        0.9
        LUA93_POOLRET89
        16120463
        0.5
        NIC2093_POOLRET89
        11676132
        0.4
        NIC2097_POOLRET89
        10538682
        0.3
        NIC2098_POOLRET89
        14353621
        0.4
        NIC2103_POOLRET89
        13619000
        0.4
        NIC2112_POOLRET89
        12207236
        0.4
        NIC2190_POOLRET89
        11507807
        0.4
        NIC2193_POOLRET89
        12240107
        0.4
        NIC2195_POOLRET89
        16382350
        0.5
        NIC2197_POOLRET89
        12883133
        0.4
        NIC2360_POOLRET89
        22031839
        0.7
        NIC2369_POOLRET89
        11754025
        0.4
        NIC2553_POOLRET89
        2669
        0.0
        NIC2553_POOLRET89_2
        28218910
        0.9
        NIC2554_POOLRET89
        11319359
        0.3
        NIC2555_POOLRET89
        26099154
        0.8
        NIC2556_POOLRET89
        13946439
        0.4
        NIC2557_POOLRET89
        15064694
        0.5
        NIC2558_POOLRET89
        16618024
        0.5
        NIC2559_POOLRET89
        14818061
        0.5
        NIC2560_POOLRET89
        10232545
        0.3
        NIC2561_POOLRET89
        11744589
        0.4
        NIC2562_POOLRET89
        15225392
        0.5
        NIC2563_POOLRET89
        16931716
        0.5
        NIC2564_POOLRET89
        10265646
        0.3
        NIC2565_POOLRET89
        15025057
        0.5
        NIC2566_POOLRET89
        14456418
        0.4
        NIC2567_POOLRET89
        19553757
        0.6
        NIC2568_POOLRET89
        14335342
        0.4
        NIC2569_POOLRET89
        875.0
        0.0
        NIC2569_POOLRET89_2
        32477296
        1.0
        NIC2570_POOLRET89
        11869427
        0.4
        NIC2571_POOLRET89
        11303546
        0.3
        NIC2572_POOLRET89
        12384455
        0.4
        NIC2573_POOLRET89
        20668975
        0.6
        NIC2574_POOLRET89
        15674473
        0.5
        NIC2575_POOLRET89
        12672222
        0.4
        NIC2576_POOLRET89
        14841411
        0.5
        NIC2577_POOLRET89
        10267705
        0.3
        PS9148_POOLRET89
        13297690
        0.4
        PS9334_POOLRET89
        10658801
        0.3
        QG3523_POOLRET89
        14553726
        0.5
        QG4706_POOLRET89
        29860851
        0.9
        QG4718_POOLRET89
        25063263
        0.8
        QG4878_POOLRET89
        11542849
        0.4
        QG4944_POOLRET89
        11745808
        0.4
        QG4953_POOLRET89
        16806392
        0.5
        QG5314_POOLRET89
        13914141
        0.4
        QG5348_POOLRET89
        19870082
        0.6
        QG5578_POOLRET89
        721.0
        0.0
        QG5578_POOLRET89_2
        24774308
        0.8
        QG5579_POOLRET89
        13609855
        0.4
        QG5580_POOLRET89
        11677410
        0.4
        QG5581_POOLRET89
        11388988
        0.4
        QG5582_POOLRET89
        13527230
        0.4
        QG5588_POOLRET89
        12613682
        0.4
        QG5589_POOLRET89
        12884858
        0.4
        QG5602_POOLRET89
        13680913
        0.4
        QG5603_POOLRET89
        16486781
        0.5
        QG5604_POOLRET89
        13232530
        0.4
        QG5611_POOLRET89
        13588286
        0.4
        QG5612_POOLRET89
        14026524
        0.4
        QG5628_POOLRET89
        10512227
        0.3
        QG5629_POOLRET89
        15419833
        0.5
        QG5631_POOLRET89
        10607357
        0.3
        QG5632_POOLRET89
        14825933
        0.5
        QG5633_POOLRET89
        24938806
        0.8
        QG5638_POOLRET89
        15540938
        0.5
        QG5638_POOLRET89_2
        30086318
        0.9
        QG5643_POOLRET89
        9495472
        0.3
        QG5650_POOLRET89
        13619338
        0.4
        QG5652_POOLRET89
        14669386
        0.5
        QG5654_POOLRET89
        15615808
        0.5
        QG5655_POOLRET89
        11997444
        0.4
        QG5657_POOLRET89
        10450018
        0.3
        QG789_POOLRET89
        29002752
        0.9
        SOW21_POOLRET89
        11825899
        0.4
        SOW22_POOLRET89
        12288934
        0.4
        SSD24_POOLRET89
        11563079
        0.4
        SSD25_POOLRET89
        23382419
        0.7
        SSD26_POOLRET89
        12904218
        0.4
        SSD27_POOLRET89
        12990839
        0.4
        SSD28_POOLRET89
        10396066
        0.3
        SSD29_POOLRET89
        15767170
        0.5
        SSD30_POOLRET89
        12535297
        0.4
        SSD31_POOLRET89
        13173784
        0.4
        SSD32_POOLRET89
        24863712
        0.8
        SSD33_POOLRET89
        12019800
        0.4
        SSD34_POOLRET89
        11413108
        0.4
        SSD35_POOLRET89
        13157730
        0.4
        SSD36_POOLRET89
        14406544
        0.4
        SSD37_POOLRET89
        13032886
        0.4
        SSD38_POOLRET89
        12860190
        0.4
        SSD39_POOLRET89
        9694767
        0.3
        WN2174_POOLRET89
        31431547
        1.0
        WN2176_POOLRET89
        22549295
        0.7
        WN2185_POOLRET89
        24636440
        0.8
        WN2192_POOLRET89
        30087976
        0.9
        WN2196_POOLRET89
        25655605
        0.8
        WN2205_POOLRET89
        21229090
        0.7
        WN2206_POOLRET89
        29423040
        0.9
        WN2212_POOLRET89
        27146890
        0.8
        ZZY0992_POOLRET89
        16099098
        0.5
        ZZY1034_POOLRET89
        10385165
        0.3
        ZZY1075_POOLRET89
        11549917
        0.4
        ZZY1123_POOLRET89
        10312078
        0.3
        ZZY1130_POOLRET89
        9981319
        0.3
        undetermined
        257428077
        8.0

        Barcodes of Undetermined Reads


        We have determined the barcodes of your undetermined reads. Here are the top 20 barcodes. The full list is available here.

        Showing 20/20 rows and 2/2 columns.
        Barcode Sequence(s)CountFrequency (%)
        GGGGGGGG-AGATCTCG
        168042222.0
        65.3
        CAGTTCAA-GGCGTTAT
        764019.0
        0.3
        TCGTCTGA-GGGGGGGG
        550260.0
        0.2
        GAATACGA-GTCGGTAA
        349381.0
        0.1
        GAAGCCTA-ATACTGAC
        314752.0
        0.1
        GGGGGGGG-AGGTCACT
        300179.0
        0.1
        TCTGGAAC-AGTGCTAG
        277426.0
        0.1
        GGGGGGGG-NGATCTCG
        260662.0
        0.1
        GGGGGGGG-GACTGCTG
        253734.0
        0.1
        CGAGAGAA-GGGGGGGG
        247759.0
        0.1
        GGGGGGGG-GGGGGGGG
        233990.0
        0.1
        TCACGCCA-AGGAACAT
        214637.0
        0.1
        GGGGGGGG-CGTATTCG
        209981.0
        0.1
        GGGGGGGG-ACGGTCTT
        206675.0
        0.1
        GGGGGGGG-CTAGCAAG
        195313.0
        0.1
        GGGGGGGG-CGATCTCG
        188427.0
        0.1
        GGGGGGGG-TTAAGCGG
        179121.0
        0.1
        CCAAGGTT-GGGGGGGG
        171589.0
        0.1
        GGGGGGGG-CTCCTAGA
        155009.0
        0.1
        GGGGGGGG-AACCGTTC
        152252.0
        0.1

        Run Statistics

        Showing 1/1 rows and 4/4 columns.
        LaneTotal # of Single-End ReadsTotal # PF Reads% Undetermined% PhiX Aligned
        4.0
        3830022144
        3233923230
        8.0
        5.2

        FastQC

        FastQC is a quality control tool for high throughput sequence data, written by Simon Andrews at the Babraham Institute in Cambridge.

        Sequence Counts

        Sequence counts for each sample. Duplicate read counts are an estimate only.

        This plot show the total number of reads, broken down into unique and duplicate if possible (only more recent versions of FastQC give duplicate info).

        You can read more about duplicate calculation in the FastQC documentation. A small part has been copied here for convenience:

        Only sequences which first appear in the first 100,000 sequences in each file are analysed. This should be enough to get a good impression for the duplication levels in the whole file. Each sequence is tracked to the end of the file to give a representative count of the overall duplication level.

        The duplication detection requires an exact sequence match over the whole length of the sequence. Any reads over 75bp in length are truncated to 50bp for this analysis.

        Flat image plot. Toolbox functions such as highlighting / hiding samples will not work (see the docs).

        Sequence Quality Histograms

        The mean quality value across each base position in the read.

        To enable multiple samples to be plotted on the same graph, only the mean quality scores are plotted (unlike the box plots seen in FastQC reports).

        Taken from the FastQC help:

        The y-axis on the graph shows the quality scores. The higher the score, the better the base call. The background of the graph divides the y axis into very good quality calls (green), calls of reasonable quality (orange), and calls of poor quality (red). The quality of calls on most platforms will degrade as the run progresses, so it is common to see base calls falling into the orange area towards the end of a read.

        Flat image plot. Toolbox functions such as highlighting / hiding samples will not work (see the docs).

        Per Sequence Quality Scores

        The number of reads with average quality scores. Shows if a subset of reads has poor quality.

        From the FastQC help:

        The per sequence quality score report allows you to see if a subset of your sequences have universally low quality values. It is often the case that a subset of sequences will have universally poor quality, however these should represent only a small percentage of the total sequences.

        Flat image plot. Toolbox functions such as highlighting / hiding samples will not work (see the docs).

        Per Base Sequence Content

        The proportion of each base position for which each of the four normal DNA bases has been called.

        To enable multiple samples to be shown in a single plot, the base composition data is shown as a heatmap. The colours represent the balance between the four bases: an even distribution should give an even muddy brown colour. Hover over the plot to see the percentage of the four bases under the cursor.

        To see the data as a line plot, as in the original FastQC graph, click on a sample track.

        From the FastQC help:

        Per Base Sequence Content plots out the proportion of each base position in a file for which each of the four normal DNA bases has been called.

        In a random library you would expect that there would be little to no difference between the different bases of a sequence run, so the lines in this plot should run parallel with each other. The relative amount of each base should reflect the overall amount of these bases in your genome, but in any case they should not be hugely imbalanced from each other.

        It's worth noting that some types of library will always produce biased sequence composition, normally at the start of the read. Libraries produced by priming using random hexamers (including nearly all RNA-Seq libraries) and those which were fragmented using transposases inherit an intrinsic bias in the positions at which reads start. This bias does not concern an absolute sequence, but instead provides enrichement of a number of different K-mers at the 5' end of the reads. Whilst this is a true technical bias, it isn't something which can be corrected by trimming and in most cases doesn't seem to adversely affect the downstream analysis.

        Click a sample row to see a line plot for that dataset.
        Rollover for sample name
        Position: -
        %T: -
        %C: -
        %A: -
        %G: -

        Per Sequence GC Content

        The average GC content of reads. Normal random library typically have a roughly normal distribution of GC content.

        From the FastQC help:

        This module measures the GC content across the whole length of each sequence in a file and compares it to a modelled normal distribution of GC content.

        In a normal random library you would expect to see a roughly normal distribution of GC content where the central peak corresponds to the overall GC content of the underlying genome. Since we don't know the the GC content of the genome the modal GC content is calculated from the observed data and used to build a reference distribution.

        An unusually shaped distribution could indicate a contaminated library or some other kinds of biased subset. A normal distribution which is shifted indicates some systematic bias which is independent of base position. If there is a systematic bias which creates a shifted normal distribution then this won't be flagged as an error by the module since it doesn't know what your genome's GC content should be.

        Flat image plot. Toolbox functions such as highlighting / hiding samples will not work (see the docs).

        Per Base N Content

        The percentage of base calls at each position for which an N was called.

        From the FastQC help:

        If a sequencer is unable to make a base call with sufficient confidence then it will normally substitute an N rather than a conventional base call. This graph shows the percentage of base calls at each position for which an N was called.

        It's not unusual to see a very low proportion of Ns appearing in a sequence, especially nearer the end of a sequence. However, if this proportion rises above a few percent it suggests that the analysis pipeline was unable to interpret the data well enough to make valid base calls.

        Flat image plot. Toolbox functions such as highlighting / hiding samples will not work (see the docs).

        Sequence Length Distribution

        All samples have sequences of a single length (151bp).

        Sequence Duplication Levels

        The relative level of duplication found for every sequence.

        From the FastQC Help:

        In a diverse library most sequences will occur only once in the final set. A low level of duplication may indicate a very high level of coverage of the target sequence, but a high level of duplication is more likely to indicate some kind of enrichment bias (eg PCR over amplification). This graph shows the degree of duplication for every sequence in a library: the relative number of sequences with different degrees of duplication.

        Only sequences which first appear in the first 100,000 sequences in each file are analysed. This should be enough to get a good impression for the duplication levels in the whole file. Each sequence is tracked to the end of the file to give a representative count of the overall duplication level.

        The duplication detection requires an exact sequence match over the whole length of the sequence. Any reads over 75bp in length are truncated to 50bp for this analysis.

        In a properly diverse library most sequences should fall into the far left of the plot in both the red and blue lines. A general level of enrichment, indicating broad oversequencing in the library will tend to flatten the lines, lowering the low end and generally raising other categories. More specific enrichments of subsets, or the presence of low complexity contaminants will tend to produce spikes towards the right of the plot.

        Flat image plot. Toolbox functions such as highlighting / hiding samples will not work (see the docs).

        Overrepresented sequences

        The total amount of overrepresented sequences found in each library.

        FastQC calculates and lists overrepresented sequences in FastQ files. It would not be possible to show this for all samples in a MultiQC report, so instead this plot shows the number of sequences categorized as over represented.

        Sometimes, a single sequence may account for a large number of reads in a dataset. To show this, the bars are split into two: the first shows the overrepresented reads that come from the single most common sequence. The second shows the total count from all remaining overrepresented sequences.

        From the FastQC Help:

        A normal high-throughput library will contain a diverse set of sequences, with no individual sequence making up a tiny fraction of the whole. Finding that a single sequence is very overrepresented in the set either means that it is highly biologically significant, or indicates that the library is contaminated, or not as diverse as you expected.

        FastQC lists all of the sequences which make up more than 0.1% of the total. To conserve memory only sequences which appear in the first 100,000 sequences are tracked to the end of the file. It is therefore possible that a sequence which is overrepresented but doesn't appear at the start of the file for some reason could be missed by this module.

        Flat image plot. Toolbox functions such as highlighting / hiding samples will not work (see the docs).

        Adapter Content

        The cumulative percentage count of the proportion of your library which has seen each of the adapter sequences at each position.

        Note that only samples with ≥ 0.1% adapter contamination are shown.

        There may be several lines per sample, as one is shown for each adapter detected in the file.

        From the FastQC Help:

        The plot shows a cumulative percentage count of the proportion of your library which has seen each of the adapter sequences at each position. Once a sequence has been seen in a read it is counted as being present right through to the end of the read so the percentages you see will only increase as the read length goes on.

        Flat image plot. Toolbox functions such as highlighting / hiding samples will not work (see the docs).

        Status Checks

        Status for each FastQC section showing whether results seem entirely normal (green), slightly abnormal (orange) or very unusual (red).

        FastQC assigns a status for each section of the report. These give a quick evaluation of whether the results of the analysis seem entirely normal (green), slightly abnormal (orange) or very unusual (red).

        It is important to stress that although the analysis results appear to give a pass/fail result, these evaluations must be taken in the context of what you expect from your library. A 'normal' sample as far as FastQC is concerned is random and diverse. Some experiments may be expected to produce libraries which are biased in particular ways. You should treat the summary evaluations therefore as pointers to where you should concentrate your attention and understand why your library may not look random and diverse.

        Specific guidance on how to interpret the output of each module can be found in the relevant report section, or in the FastQC help.

        In this heatmap, we summarise all of these into a single heatmap for a quick overview. Note that not all FastQC sections have plots in MultiQC reports, but all status checks are shown in this heatmap.

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        MultiQC v1.9 - Written by Phil Ewels, available on GitHub.

        This report uses HighCharts, jQuery, jQuery UI, Bootstrap, FileSaver.js and clipboard.js.