MultiQC Report

A modular tool to aggregate results from bioinformatics analyses across many samples into a single report.

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Report generated on 2025-01-30, 18:57 based on data in: /scratch/gencore/GENEFLOW/work/nf/78/28d323a4e1a39aaed58f3e40343b9a/2

General Statistics

Showing ³⁸⁶/₃₈₆ rows and ³/₅ columns.

Sample Name	% Dups	% GC	Length	% Failed	M Seqs
H2MF5DSXF_l02_n01_ECA2119_282_POOLRET87	22.6%	37%	151 bp	9%	17.3
H2MF5DSXF_l02_n01_ECA2119_287_POOLRET87	23.0%	37%	151 bp	9%	17.4
H2MF5DSXF_l02_n01_ECA2969_POOLRET87	23.8%	37%	151 bp	9%	14.5
H2MF5DSXF_l02_n01_ECA2976_POOLRET87	23.2%	39%	151 bp	9%	13.9
H2MF5DSXF_l02_n01_ECA2978_POOLRET87	24.5%	37%	151 bp	9%	20.6
H2MF5DSXF_l02_n01_ECA2979_POOLRET87	24.2%	38%	151 bp	9%	18.9
H2MF5DSXF_l02_n01_ECA2980_POOLRET87	22.7%	36%	151 bp	9%	14.9
H2MF5DSXF_l02_n01_ECA2984_POOLRET87	22.8%	36%	151 bp	9%	13.6
H2MF5DSXF_l02_n01_ECA2990_POOLRET87	20.6%	37%	151 bp	9%	9.1
H2MF5DSXF_l02_n01_ECA2991_POOLRET87	21.2%	37%	151 bp	9%	11.0
H2MF5DSXF_l02_n01_ECA2993_POOLRET87	24.8%	37%	151 bp	9%	14.9
H2MF5DSXF_l02_n01_ECA2994_POOLRET87	22.7%	37%	151 bp	9%	10.8
H2MF5DSXF_l02_n01_ECA2995_POOLRET87	23.3%	37%	151 bp	9%	12.4
H2MF5DSXF_l02_n01_ECA2996_POOLRET87	23.1%	37%	151 bp	9%	13.6
H2MF5DSXF_l02_n01_ECA2997_POOLRET87	22.0%	37%	151 bp	9%	13.7
H2MF5DSXF_l02_n01_ECA2998_POOLRET87	24.5%	37%	151 bp	9%	15.2
H2MF5DSXF_l02_n01_ECA2999_POOLRET87	23.3%	37%	151 bp	9%	13.5
H2MF5DSXF_l02_n01_ECA3000_POOLRET87	22.5%	37%	151 bp	9%	11.0
H2MF5DSXF_l02_n01_ECA3001_POOLRET87	24.4%	37%	151 bp	9%	16.0
H2MF5DSXF_l02_n01_ECA3003_POOLRET87	23.6%	37%	151 bp	9%	13.7
H2MF5DSXF_l02_n01_ECA3004_POOLRET87	23.3%	37%	151 bp	9%	15.7
H2MF5DSXF_l02_n01_ECA3008_POOLRET87	24.0%	37%	151 bp	9%	14.9
H2MF5DSXF_l02_n01_ECA3009_POOLRET87	24.6%	36%	151 bp	9%	16.1
H2MF5DSXF_l02_n01_ECA3010_POOLRET87	22.9%	38%	151 bp	9%	14.8
H2MF5DSXF_l02_n01_ECA3011_POOLRET87	25.1%	37%	151 bp	9%	19.1
H2MF5DSXF_l02_n01_ECA3013_POOLRET87	22.1%	37%	151 bp	9%	10.6
H2MF5DSXF_l02_n01_ECA3014_POOLRET87	24.5%	39%	151 bp	9%	18.3
H2MF5DSXF_l02_n01_ECA3015_POOLRET87	27.4%	39%	151 bp	9%	24.4
H2MF5DSXF_l02_n01_ECA3017_POOLRET87	22.2%	39%	151 bp	9%	14.8
H2MF5DSXF_l02_n01_ECA3018_POOLRET87	23.3%	38%	151 bp	9%	13.1
H2MF5DSXF_l02_n01_ECA3019_POOLRET87	24.6%	38%	151 bp	9%	15.4
H2MF5DSXF_l02_n01_ECA3021_POOLRET87	24.0%	37%	151 bp	9%	14.9
H2MF5DSXF_l02_n01_ECA3022_POOLRET87	23.5%	39%	151 bp	9%	15.2
H2MF5DSXF_l02_n01_ECA3026_POOLRET87	23.0%	39%	151 bp	9%	12.3
H2MF5DSXF_l02_n01_ECA3027_POOLRET87	23.0%	37%	151 bp	9%	15.6
H2MF5DSXF_l02_n01_ECA3039_POOLRET87	24.9%	37%	151 bp	9%	18.7
H2MF5DSXF_l02_n01_ECA3044_POOLRET87	24.3%	37%	151 bp	9%	15.3
H2MF5DSXF_l02_n01_ECA3046_POOLRET87	25.1%	37%	151 bp	9%	17.3
H2MF5DSXF_l02_n01_ECA3048_POOLRET87	22.4%	37%	151 bp	9%	14.5
H2MF5DSXF_l02_n01_ECA3050_POOLRET87	20.3%	36%	151 bp	9%	9.9
H2MF5DSXF_l02_n01_ECA3051_POOLRET87	22.7%	37%	151 bp	9%	17.0
H2MF5DSXF_l02_n01_ECA3052_POOLRET87	21.6%	37%	151 bp	9%	9.6
H2MF5DSXF_l02_n01_ECA3056_POOLRET87	21.1%	38%	151 bp	9%	10.5
H2MF5DSXF_l02_n01_ECA3058_POOLRET87	27.8%	37%	151 bp	9%	18.5
H2MF5DSXF_l02_n01_ECA3059_POOLRET87	24.2%	39%	151 bp	9%	17.0
H2MF5DSXF_l02_n01_ECA3060_POOLRET87	21.8%	36%	151 bp	9%	12.7
H2MF5DSXF_l02_n01_ECA3061_POOLRET87	24.7%	39%	151 bp	9%	19.2
H2MF5DSXF_l02_n01_ECA3063_POOLRET87	23.0%	37%	151 bp	9%	15.3
H2MF5DSXF_l02_n01_ECA3064_POOLRET87	22.0%	39%	151 bp	9%	13.1
H2MF5DSXF_l02_n01_ECA3067_POOLRET87	22.9%	37%	151 bp	9%	10.9
H2MF5DSXF_l02_n01_ECA3068_POOLRET87	22.4%	37%	151 bp	9%	15.5
H2MF5DSXF_l02_n01_ECA3069_POOLRET87	20.9%	37%	151 bp	9%	11.1
H2MF5DSXF_l02_n01_ECA3070_POOLRET87	23.5%	37%	151 bp	9%	14.1
H2MF5DSXF_l02_n01_ECA3071_POOLRET87	24.5%	38%	151 bp	9%	16.0
H2MF5DSXF_l02_n01_ECA3072_POOLRET87	22.1%	36%	151 bp	9%	13.8
H2MF5DSXF_l02_n01_ECA3074_POOLRET87	22.5%	37%	151 bp	9%	15.3
H2MF5DSXF_l02_n01_ECA3075_POOLRET87	25.9%	37%	151 bp	9%	19.4
H2MF5DSXF_l02_n01_ECA3076_POOLRET87	24.9%	37%	151 bp	9%	11.6
H2MF5DSXF_l02_n01_ECA3078_POOLRET87	21.4%	37%	151 bp	9%	13.6
H2MF5DSXF_l02_n01_ECA3079_POOLRET87	21.4%	37%	151 bp	9%	13.8
H2MF5DSXF_l02_n01_ECA3080_POOLRET87	23.3%	37%	151 bp	9%	17.1
H2MF5DSXF_l02_n01_ECA3081_POOLRET87	25.6%	36%	151 bp	9%	16.5
H2MF5DSXF_l02_n01_ECA3082_POOLRET87	23.2%	37%	151 bp	9%	15.0
H2MF5DSXF_l02_n01_ECA3083_POOLRET87	22.4%	38%	151 bp	9%	12.7
H2MF5DSXF_l02_n01_ECA3084_POOLRET87	23.3%	39%	151 bp	9%	16.3
H2MF5DSXF_l02_n01_ECA3086_POOLRET87	24.2%	39%	151 bp	9%	16.0
H2MF5DSXF_l02_n01_ECA3090_POOLRET87	25.2%	38%	151 bp	9%	16.9
H2MF5DSXF_l02_n01_ECA3093_POOLRET87	26.5%	38%	151 bp	9%	20.2
H2MF5DSXF_l02_n01_ECA3109_POOLRET87	23.7%	38%	151 bp	9%	17.2
H2MF5DSXF_l02_n01_ECA3123_POOLRET87	23.8%	38%	151 bp	9%	14.9
H2MF5DSXF_l02_n01_ECA3126_POOLRET87	21.5%	37%	151 bp	9%	10.2
H2MF5DSXF_l02_n01_ECA3127_POOLRET87	22.0%	37%	151 bp	9%	12.0
H2MF5DSXF_l02_n01_ECA3132_POOLRET87	26.1%	38%	151 bp	9%	15.0
H2MF5DSXF_l02_n01_ECA3133_POOLRET87	25.2%	38%	151 bp	9%	11.5
H2MF5DSXF_l02_n01_ECA3134_POOLRET87	23.1%	37%	151 bp	9%	7.8
H2MF5DSXF_l02_n01_ECA3135_POOLRET87	28.3%	37%	151 bp	9%	18.7
H2MF5DSXF_l02_n01_ECA3136_POOLRET87	27.5%	37%	151 bp	9%	19.6
H2MF5DSXF_l02_n01_ECA3138_POOLRET87	22.8%	38%	151 bp	9%	15.9
H2MF5DSXF_l02_n01_ECA3139_POOLRET87	25.3%	38%	151 bp	9%	13.0
H2MF5DSXF_l02_n01_ECA3140_POOLRET87	25.1%	37%	151 bp	9%	15.1
H2MF5DSXF_l02_n01_ECA3157_POOLRET87	24.2%	37%	151 bp	9%	14.9
H2MF5DSXF_l02_n01_ECA3199_POOLRET87	23.3%	37%	151 bp	9%	15.3
H2MF5DSXF_l02_n01_ECA3205_POOLRET87	22.9%	37%	151 bp	9%	15.5
H2MF5DSXF_l02_n01_ECA3208_POOLRET87	24.3%	37%	151 bp	9%	18.7
H2MF5DSXF_l02_n01_ECA3493_POOLRET87	23.1%	38%	151 bp	9%	12.0
H2MF5DSXF_l02_n01_ECA3494_POOLRET87	25.5%	37%	151 bp	9%	16.8
H2MF5DSXF_l02_n01_ECA3495_POOLRET87	21.9%	37%	151 bp	9%	14.6
H2MF5DSXF_l02_n01_ECA3496_POOLRET87	25.6%	37%	151 bp	9%	20.4
H2MF5DSXF_l02_n01_ECA3497_POOLRET87	23.6%	37%	151 bp	9%	13.4
H2MF5DSXF_l02_n01_ECA3498_POOLRET87	24.1%	39%	151 bp	9%	17.5
H2MF5DSXF_l02_n01_ECA3499_POOLRET87	22.2%	38%	151 bp	9%	11.6
H2MF5DSXF_l02_n01_ECA3500_POOLRET87	25.2%	39%	151 bp	9%	17.8
H2MF5DSXF_l02_n01_ECA3501_POOLRET87	23.5%	38%	151 bp	9%	15.2
H2MF5DSXF_l02_n01_ECA3502_POOLRET87	26.0%	38%	151 bp	9%	17.8
H2MF5DSXF_l02_n01_ECA3503_POOLRET87	24.2%	39%	151 bp	9%	17.9
H2MF5DSXF_l02_n01_ECA3504_POOLRET87	25.4%	38%	151 bp	9%	27.2
H2MF5DSXF_l02_n01_ECA3505_POOLRET87	25.9%	38%	151 bp	9%	21.2
H2MF5DSXF_l02_n01_ECA3506_POOLRET87	25.0%	39%	151 bp	9%	16.9
H2MF5DSXF_l02_n01_ECA3507_POOLRET87	26.0%	39%	151 bp	9%	22.6
H2MF5DSXF_l02_n01_ECA3508_POOLRET87	23.0%	38%	151 bp	9%	13.5
H2MF5DSXF_l02_n01_ECA3509_POOLRET87	27.3%	39%	151 bp	9%	27.4
H2MF5DSXF_l02_n01_ECA3510_POOLRET87	25.6%	38%	151 bp	9%	21.7
H2MF5DSXF_l02_n01_ECA3511_POOLRET87	27.2%	37%	151 bp	9%	26.8
H2MF5DSXF_l02_n01_ECA3513_POOLRET87	25.3%	37%	151 bp	9%	15.6
H2MF5DSXF_l02_n01_ECA3514_POOLRET87	23.4%	36%	151 bp	9%	13.5
H2MF5DSXF_l02_n01_ECA3515_POOLRET87	24.9%	39%	151 bp	9%	21.8
H2MF5DSXF_l02_n01_ECA3516_POOLRET87	26.8%	37%	151 bp	9%	23.8
H2MF5DSXF_l02_n01_ECA3517_POOLRET87	22.9%	37%	151 bp	9%	16.0
H2MF5DSXF_l02_n01_ECA3518_POOLRET87	23.4%	37%	151 bp	9%	18.7
H2MF5DSXF_l02_n01_ECA3519_POOLRET87	24.0%	38%	151 bp	9%	13.8
H2MF5DSXF_l02_n01_ECA3520_POOLRET87	23.3%	38%	151 bp	9%	14.4
H2MF5DSXF_l02_n01_ECA3521_POOLRET87	22.5%	39%	151 bp	9%	15.2
H2MF5DSXF_l02_n01_ECA3522_POOLRET87	24.1%	39%	151 bp	9%	15.4
H2MF5DSXF_l02_n01_ECA3523_POOLRET87	26.2%	37%	151 bp	9%	19.6
H2MF5DSXF_l02_n01_ECA3524_POOLRET87	26.4%	38%	151 bp	9%	21.9
H2MF5DSXF_l02_n01_ECA3525_POOLRET87	25.1%	37%	151 bp	9%	15.5
H2MF5DSXF_l02_n01_ECA3526_POOLRET87	24.7%	37%	151 bp	9%	18.9
H2MF5DSXF_l02_n01_ECA3527_POOLRET87	25.1%	37%	151 bp	9%	19.0
H2MF5DSXF_l02_n01_ECA3528_POOLRET87	24.2%	37%	151 bp	9%	20.4
H2MF5DSXF_l02_n01_ECA3601_POOLRET87	22.2%	37%	151 bp	9%	14.3
H2MF5DSXF_l02_n01_ECA3602_POOLRET87	23.0%	37%	151 bp	9%	14.0
H2MF5DSXF_l02_n01_ECA3603_POOLRET87	23.7%	37%	151 bp	9%	17.1
H2MF5DSXF_l02_n01_ECA3604_POOLRET87	21.2%	36%	151 bp	9%	10.9
H2MF5DSXF_l02_n01_ECA3605_POOLRET87	23.7%	37%	151 bp	9%	17.7
H2MF5DSXF_l02_n01_ECA3606_POOLRET87	22.9%	37%	151 bp	9%	15.6
H2MF5DSXF_l02_n01_ECA3607_POOLRET87	22.5%	36%	151 bp	9%	12.7
H2MF5DSXF_l02_n01_ECA3609_POOLRET87	20.0%	37%	151 bp	9%	13.4
H2MF5DSXF_l02_n01_ECA3610_POOLRET87	24.1%	37%	151 bp	9%	17.0
H2MF5DSXF_l02_n01_ECA3611_POOLRET87	22.6%	37%	151 bp	9%	13.4
H2MF5DSXF_l02_n01_ECA3629_POOLRET87	25.9%	39%	151 bp	9%	28.1
H2MF5DSXF_l02_n01_ECA3630_POOLRET87	22.2%	37%	151 bp	9%	10.1
H2MF5DSXF_l02_n01_ECA3631_POOLRET87	23.9%	38%	151 bp	9%	13.3
H2MF5DSXF_l02_n01_ECA3632_POOLRET87	23.2%	37%	151 bp	9%	18.5
H2MF5DSXF_l02_n01_ECA3633_POOLRET87	23.5%	39%	151 bp	9%	14.5
H2MF5DSXF_l02_n01_ECA3634_POOLRET87	25.1%	37%	151 bp	9%	14.8
H2MF5DSXF_l02_n01_ECA3635_POOLRET87	26.8%	37%	151 bp	9%	21.2
H2MF5DSXF_l02_n01_ECA3637_POOLRET87	24.0%	37%	151 bp	9%	12.9
H2MF5DSXF_l02_n01_ECA3638_POOLRET87	24.6%	37%	151 bp	9%	19.9
H2MF5DSXF_l02_n01_ECA3639_POOLRET87	23.6%	39%	151 bp	9%	14.9
H2MF5DSXF_l02_n01_ECA3640_POOLRET87	25.7%	37%	151 bp	9%	17.1
H2MF5DSXF_l02_n01_ECA3641_POOLRET87	22.6%	37%	151 bp	9%	11.4
H2MF5DSXF_l02_n01_ECA3642_POOLRET87	21.5%	38%	151 bp	9%	10.0
H2MF5DSXF_l02_n01_ECA3643_POOLRET87	25.7%	37%	151 bp	9%	19.0
H2MF5DSXF_l02_n01_ECA3644_POOLRET87	23.7%	37%	151 bp	9%	16.5
H2MF5DSXF_l02_n01_ECA3645_POOLRET87	24.9%	37%	151 bp	9%	21.3
H2MF5DSXF_l02_n01_ECA3646_POOLRET87	25.9%	37%	151 bp	9%	18.7
H2MF5DSXF_l02_n01_ECA3647_POOLRET87	25.3%	37%	151 bp	9%	14.6
H2MF5DSXF_l02_n01_ECA3648_POOLRET87	24.0%	38%	151 bp	9%	13.8
H2MF5DSXF_l02_n01_ECA3649_POOLRET87	24.1%	39%	151 bp	9%	14.1
H2MF5DSXF_l02_n01_ECA3650_POOLRET87	22.7%	39%	151 bp	9%	12.1
H2MF5DSXF_l02_n01_ECA3651_POOLRET87	24.5%	39%	151 bp	9%	17.3
H2MF5DSXF_l02_n01_ECA3652_POOLRET87	24.4%	39%	151 bp	9%	16.6
H2MF5DSXF_l02_n01_ECA3653_POOLRET87	24.4%	39%	151 bp	9%	17.0
H2MF5DSXF_l02_n01_ECA3654_POOLRET87	24.7%	37%	151 bp	9%	15.2
H2MF5DSXF_l02_n01_ECA3655_POOLRET87	26.5%	39%	151 bp	9%	20.7
H2MF5DSXF_l02_n01_ECA3656_POOLRET87	24.5%	37%	151 bp	9%	15.2
H2MF5DSXF_l02_n01_ECA3657_POOLRET87	23.5%	38%	151 bp	9%	14.4
H2MF5DSXF_l02_n01_ECA3658_POOLRET87	26.2%	37%	151 bp	9%	18.1
H2MF5DSXF_l02_n01_ECA3659_POOLRET87	23.7%	37%	151 bp	9%	15.8
H2MF5DSXF_l02_n01_ECA3660_POOLRET87	23.5%	37%	151 bp	9%	15.0
H2MF5DSXF_l02_n01_ECA3661_POOLRET87	22.7%	38%	151 bp	9%	14.2
H2MF5DSXF_l02_n01_ECA3662_POOLRET87	22.7%	39%	151 bp	9%	9.6
H2MF5DSXF_l02_n01_ECA3663_POOLRET87	24.9%	37%	151 bp	9%	15.2
H2MF5DSXF_l02_n01_ECA3664_POOLRET87	24.3%	37%	151 bp	9%	13.7
H2MF5DSXF_l02_n01_ECA3665_POOLRET87	23.8%	37%	151 bp	9%	14.5
H2MF5DSXF_l02_n01_ECA3666_POOLRET87	24.7%	37%	151 bp	9%	19.1
H2MF5DSXF_l02_n01_ECA3667_POOLRET87	23.4%	36%	151 bp	9%	16.4
H2MF5DSXF_l02_n01_ECA3668_POOLRET87	26.7%	37%	151 bp	9%	24.0
H2MF5DSXF_l02_n01_ECA3669_POOLRET87	25.7%	39%	151 bp	9%	22.1
H2MF5DSXF_l02_n01_ECA3670_POOLRET87	23.3%	37%	151 bp	9%	15.0
H2MF5DSXF_l02_n01_ECA3671_POOLRET87	25.8%	38%	151 bp	9%	15.4
H2MF5DSXF_l02_n01_ECA3672_POOLRET87	23.5%	37%	151 bp	9%	17.8
H2MF5DSXF_l02_n01_ECA3673_POOLRET87	22.7%	37%	151 bp	9%	17.6
H2MF5DSXF_l02_n01_ECA3674_POOLRET87	25.0%	38%	151 bp	9%	17.7
H2MF5DSXF_l02_n01_ECA3675_POOLRET87	23.8%	39%	151 bp	9%	13.9
H2MF5DSXF_l02_n01_ECA3676_POOLRET87	24.9%	36%	151 bp	9%	15.5
H2MF5DSXF_l02_n01_ECA3677_POOLRET87	25.0%	36%	151 bp	9%	15.4
H2MF5DSXF_l02_n01_ECA3678_POOLRET87	21.1%	37%	151 bp	9%	11.7
H2MF5DSXF_l02_n01_ECA3679_POOLRET87	23.3%	39%	151 bp	9%	15.0
H2MF5DSXF_l02_n01_ECA3680_POOLRET87	25.3%	37%	151 bp	9%	19.1
H2MF5DSXF_l02_n01_ECA3681_POOLRET87	26.0%	39%	151 bp	9%	16.8
H2MF5DSXF_l02_n01_ECA3682_POOLRET87	24.8%	37%	151 bp	9%	16.2
H2MF5DSXF_l02_n01_ECA3683_POOLRET87	22.9%	40%	151 bp	9%	13.2
H2MF5DSXF_l02_n01_ECA3684_POOLRET87	23.3%	37%	151 bp	9%	16.6
H2MF5DSXF_l02_n01_ECA3685_POOLRET87	22.6%	38%	151 bp	9%	12.6
H2MF5DSXF_l02_n01_ECA3686_POOLRET87	23.4%	37%	151 bp	9%	16.8
H2MF5DSXF_l02_n01_ECA3687_POOLRET87	22.6%	37%	151 bp	9%	15.8
H2MF5DSXF_l02_n01_ECA3688_POOLRET87	21.3%	37%	151 bp	9%	12.1
H2MF5DSXF_l02_n01_ECA3689_POOLRET87	23.2%	37%	151 bp	9%	17.9
H2MF5DSXF_l02_n01_ECA3698_POOLRET87	23.6%	38%	151 bp	9%	17.1
H2MF5DSXF_l02_n01_ECA3699_POOLRET87	25.2%	37%	151 bp	9%	24.7
H2MF5DSXF_l02_n01_ECA3700_POOLRET87	24.7%	38%	151 bp	9%	16.2
H2MF5DSXF_l02_n01_undetermined	76.1%	42%	151 bp	27%	322.7
H2MF5DSXF_l02_n02_ECA2119_282_POOLRET87	22.4%	37%	151 bp	9%	17.3
H2MF5DSXF_l02_n02_ECA2119_287_POOLRET87	22.5%	37%	151 bp	9%	17.4
H2MF5DSXF_l02_n02_ECA2969_POOLRET87	23.6%	37%	151 bp	9%	14.5
H2MF5DSXF_l02_n02_ECA2976_POOLRET87	22.9%	39%	151 bp	9%	13.9
H2MF5DSXF_l02_n02_ECA2978_POOLRET87	23.5%	37%	151 bp	9%	20.6
H2MF5DSXF_l02_n02_ECA2979_POOLRET87	23.8%	38%	151 bp	9%	18.9
H2MF5DSXF_l02_n02_ECA2980_POOLRET87	22.4%	36%	151 bp	9%	14.9
H2MF5DSXF_l02_n02_ECA2984_POOLRET87	22.4%	36%	151 bp	9%	13.6
H2MF5DSXF_l02_n02_ECA2990_POOLRET87	20.3%	37%	151 bp	9%	9.1
H2MF5DSXF_l02_n02_ECA2991_POOLRET87	21.1%	37%	151 bp	9%	11.0
H2MF5DSXF_l02_n02_ECA2993_POOLRET87	24.6%	37%	151 bp	9%	14.9
H2MF5DSXF_l02_n02_ECA2994_POOLRET87	22.5%	37%	151 bp	9%	10.8
H2MF5DSXF_l02_n02_ECA2995_POOLRET87	23.0%	37%	151 bp	9%	12.4
H2MF5DSXF_l02_n02_ECA2996_POOLRET87	22.9%	37%	151 bp	9%	13.6
H2MF5DSXF_l02_n02_ECA2997_POOLRET87	21.6%	37%	151 bp	9%	13.7
H2MF5DSXF_l02_n02_ECA2998_POOLRET87	24.2%	37%	151 bp	9%	15.2
H2MF5DSXF_l02_n02_ECA2999_POOLRET87	22.8%	37%	151 bp	9%	13.5
H2MF5DSXF_l02_n02_ECA3000_POOLRET87	22.2%	37%	151 bp	9%	11.0
H2MF5DSXF_l02_n02_ECA3001_POOLRET87	23.9%	37%	151 bp	9%	16.0
H2MF5DSXF_l02_n02_ECA3003_POOLRET87	23.4%	37%	151 bp	9%	13.7
H2MF5DSXF_l02_n02_ECA3004_POOLRET87	23.2%	37%	151 bp	9%	15.7
H2MF5DSXF_l02_n02_ECA3008_POOLRET87	23.7%	37%	151 bp	9%	14.9
H2MF5DSXF_l02_n02_ECA3009_POOLRET87	24.5%	36%	151 bp	9%	16.1
H2MF5DSXF_l02_n02_ECA3010_POOLRET87	22.6%	38%	151 bp	9%	14.8
H2MF5DSXF_l02_n02_ECA3011_POOLRET87	24.7%	37%	151 bp	9%	19.1
H2MF5DSXF_l02_n02_ECA3013_POOLRET87	21.8%	37%	151 bp	9%	10.6
H2MF5DSXF_l02_n02_ECA3014_POOLRET87	24.0%	39%	151 bp	9%	18.3
H2MF5DSXF_l02_n02_ECA3015_POOLRET87	27.0%	39%	151 bp	9%	24.4
H2MF5DSXF_l02_n02_ECA3017_POOLRET87	21.6%	39%	151 bp	9%	14.8
H2MF5DSXF_l02_n02_ECA3018_POOLRET87	23.1%	38%	151 bp	9%	13.1
H2MF5DSXF_l02_n02_ECA3019_POOLRET87	24.4%	38%	151 bp	9%	15.4
H2MF5DSXF_l02_n02_ECA3021_POOLRET87	23.6%	37%	151 bp	9%	14.9
H2MF5DSXF_l02_n02_ECA3022_POOLRET87	23.4%	39%	151 bp	9%	15.2
H2MF5DSXF_l02_n02_ECA3026_POOLRET87	22.9%	39%	151 bp	9%	12.3
H2MF5DSXF_l02_n02_ECA3027_POOLRET87	22.9%	37%	151 bp	9%	15.6
H2MF5DSXF_l02_n02_ECA3039_POOLRET87	24.7%	37%	151 bp	9%	18.7
H2MF5DSXF_l02_n02_ECA3044_POOLRET87	24.0%	37%	151 bp	9%	15.3
H2MF5DSXF_l02_n02_ECA3046_POOLRET87	25.0%	37%	151 bp	9%	17.3
H2MF5DSXF_l02_n02_ECA3048_POOLRET87	22.3%	37%	151 bp	9%	14.5
H2MF5DSXF_l02_n02_ECA3050_POOLRET87	19.9%	36%	151 bp	9%	9.9
H2MF5DSXF_l02_n02_ECA3051_POOLRET87	22.6%	37%	151 bp	9%	17.0
H2MF5DSXF_l02_n02_ECA3052_POOLRET87	21.5%	37%	151 bp	9%	9.6
H2MF5DSXF_l02_n02_ECA3056_POOLRET87	20.7%	38%	151 bp	9%	10.5
H2MF5DSXF_l02_n02_ECA3058_POOLRET87	27.7%	37%	151 bp	9%	18.5
H2MF5DSXF_l02_n02_ECA3059_POOLRET87	24.1%	39%	151 bp	9%	17.0
H2MF5DSXF_l02_n02_ECA3060_POOLRET87	21.6%	36%	151 bp	9%	12.7
H2MF5DSXF_l02_n02_ECA3061_POOLRET87	24.4%	39%	151 bp	9%	19.2
H2MF5DSXF_l02_n02_ECA3063_POOLRET87	22.9%	37%	151 bp	9%	15.3
H2MF5DSXF_l02_n02_ECA3064_POOLRET87	21.8%	38%	151 bp	9%	13.1
H2MF5DSXF_l02_n02_ECA3067_POOLRET87	22.6%	37%	151 bp	9%	10.9
H2MF5DSXF_l02_n02_ECA3068_POOLRET87	22.0%	37%	151 bp	9%	15.5
H2MF5DSXF_l02_n02_ECA3069_POOLRET87	20.7%	37%	151 bp	9%	11.1
H2MF5DSXF_l02_n02_ECA3070_POOLRET87	23.3%	37%	151 bp	9%	14.1
H2MF5DSXF_l02_n02_ECA3071_POOLRET87	24.1%	38%	151 bp	9%	16.0
H2MF5DSXF_l02_n02_ECA3072_POOLRET87	21.8%	36%	151 bp	9%	13.8
H2MF5DSXF_l02_n02_ECA3074_POOLRET87	22.2%	37%	151 bp	9%	15.3
H2MF5DSXF_l02_n02_ECA3075_POOLRET87	25.5%	37%	151 bp	9%	19.4
H2MF5DSXF_l02_n02_ECA3076_POOLRET87	24.5%	37%	151 bp	9%	11.6
H2MF5DSXF_l02_n02_ECA3078_POOLRET87	21.4%	37%	151 bp	9%	13.6
H2MF5DSXF_l02_n02_ECA3079_POOLRET87	21.2%	37%	151 bp	9%	13.8
H2MF5DSXF_l02_n02_ECA3080_POOLRET87	22.9%	37%	151 bp	9%	17.1
H2MF5DSXF_l02_n02_ECA3081_POOLRET87	25.0%	36%	151 bp	9%	16.5
H2MF5DSXF_l02_n02_ECA3082_POOLRET87	22.9%	37%	151 bp	9%	15.0
H2MF5DSXF_l02_n02_ECA3083_POOLRET87	22.0%	38%	151 bp	9%	12.7
H2MF5DSXF_l02_n02_ECA3084_POOLRET87	22.9%	39%	151 bp	9%	16.3
H2MF5DSXF_l02_n02_ECA3086_POOLRET87	24.1%	39%	151 bp	9%	16.0
H2MF5DSXF_l02_n02_ECA3090_POOLRET87	25.1%	38%	151 bp	9%	16.9
H2MF5DSXF_l02_n02_ECA3093_POOLRET87	26.2%	39%	151 bp	9%	20.2
H2MF5DSXF_l02_n02_ECA3109_POOLRET87	23.3%	38%	151 bp	9%	17.2
H2MF5DSXF_l02_n02_ECA3123_POOLRET87	23.4%	38%	151 bp	9%	14.9
H2MF5DSXF_l02_n02_ECA3126_POOLRET87	21.3%	37%	151 bp	9%	10.2
H2MF5DSXF_l02_n02_ECA3127_POOLRET87	21.6%	37%	151 bp	9%	12.0
H2MF5DSXF_l02_n02_ECA3132_POOLRET87	25.3%	38%	151 bp	9%	15.0
H2MF5DSXF_l02_n02_ECA3133_POOLRET87	24.7%	38%	151 bp	9%	11.5
H2MF5DSXF_l02_n02_ECA3134_POOLRET87	22.8%	37%	151 bp	9%	7.8
H2MF5DSXF_l02_n02_ECA3135_POOLRET87	27.9%	37%	151 bp	9%	18.7
H2MF5DSXF_l02_n02_ECA3136_POOLRET87	27.3%	37%	151 bp	9%	19.6
H2MF5DSXF_l02_n02_ECA3138_POOLRET87	22.7%	38%	151 bp	9%	15.9
H2MF5DSXF_l02_n02_ECA3139_POOLRET87	25.0%	38%	151 bp	9%	13.0
H2MF5DSXF_l02_n02_ECA3140_POOLRET87	24.8%	37%	151 bp	9%	15.1
H2MF5DSXF_l02_n02_ECA3157_POOLRET87	24.0%	37%	151 bp	9%	14.9
H2MF5DSXF_l02_n02_ECA3199_POOLRET87	23.0%	36%	151 bp	9%	15.3
H2MF5DSXF_l02_n02_ECA3205_POOLRET87	22.7%	37%	151 bp	9%	15.5
H2MF5DSXF_l02_n02_ECA3208_POOLRET87	24.2%	37%	151 bp	9%	18.7
H2MF5DSXF_l02_n02_ECA3493_POOLRET87	22.9%	38%	151 bp	9%	12.0
H2MF5DSXF_l02_n02_ECA3494_POOLRET87	24.9%	37%	151 bp	9%	16.8
H2MF5DSXF_l02_n02_ECA3495_POOLRET87	21.6%	37%	151 bp	9%	14.6
H2MF5DSXF_l02_n02_ECA3496_POOLRET87	24.8%	37%	151 bp	9%	20.4
H2MF5DSXF_l02_n02_ECA3497_POOLRET87	23.4%	37%	151 bp	9%	13.4
H2MF5DSXF_l02_n02_ECA3498_POOLRET87	23.3%	39%	151 bp	9%	17.5
H2MF5DSXF_l02_n02_ECA3499_POOLRET87	22.0%	38%	151 bp	9%	11.6
H2MF5DSXF_l02_n02_ECA3500_POOLRET87	24.9%	39%	151 bp	9%	17.8
H2MF5DSXF_l02_n02_ECA3501_POOLRET87	23.3%	38%	151 bp	9%	15.2
H2MF5DSXF_l02_n02_ECA3502_POOLRET87	25.8%	39%	151 bp	9%	17.8
H2MF5DSXF_l02_n02_ECA3503_POOLRET87	24.1%	39%	151 bp	9%	17.9
H2MF5DSXF_l02_n02_ECA3504_POOLRET87	25.2%	38%	151 bp	9%	27.2
H2MF5DSXF_l02_n02_ECA3505_POOLRET87	25.4%	38%	151 bp	9%	21.2
H2MF5DSXF_l02_n02_ECA3506_POOLRET87	24.8%	39%	151 bp	9%	16.9
H2MF5DSXF_l02_n02_ECA3507_POOLRET87	25.8%	39%	151 bp	9%	22.6
H2MF5DSXF_l02_n02_ECA3508_POOLRET87	22.9%	38%	151 bp	9%	13.5
H2MF5DSXF_l02_n02_ECA3509_POOLRET87	27.1%	39%	151 bp	9%	27.4
H2MF5DSXF_l02_n02_ECA3510_POOLRET87	25.1%	38%	151 bp	9%	21.7
H2MF5DSXF_l02_n02_ECA3511_POOLRET87	27.1%	37%	151 bp	9%	26.8
H2MF5DSXF_l02_n02_ECA3513_POOLRET87	24.9%	37%	151 bp	9%	15.6
H2MF5DSXF_l02_n02_ECA3514_POOLRET87	23.2%	36%	151 bp	9%	13.5
H2MF5DSXF_l02_n02_ECA3515_POOLRET87	24.8%	39%	151 bp	9%	21.8
H2MF5DSXF_l02_n02_ECA3516_POOLRET87	26.2%	37%	151 bp	9%	23.8
H2MF5DSXF_l02_n02_ECA3517_POOLRET87	22.9%	37%	151 bp	9%	16.0
H2MF5DSXF_l02_n02_ECA3518_POOLRET87	22.9%	37%	151 bp	9%	18.7
H2MF5DSXF_l02_n02_ECA3519_POOLRET87	23.8%	38%	151 bp	9%	13.8
H2MF5DSXF_l02_n02_ECA3520_POOLRET87	23.0%	38%	151 bp	9%	14.4
H2MF5DSXF_l02_n02_ECA3521_POOLRET87	22.4%	39%	151 bp	9%	15.2
H2MF5DSXF_l02_n02_ECA3522_POOLRET87	23.8%	38%	151 bp	9%	15.4
H2MF5DSXF_l02_n02_ECA3523_POOLRET87	26.0%	37%	151 bp	9%	19.6
H2MF5DSXF_l02_n02_ECA3524_POOLRET87	26.0%	38%	151 bp	9%	21.9
H2MF5DSXF_l02_n02_ECA3525_POOLRET87	24.8%	37%	151 bp	9%	15.5
H2MF5DSXF_l02_n02_ECA3526_POOLRET87	24.3%	37%	151 bp	9%	18.9
H2MF5DSXF_l02_n02_ECA3527_POOLRET87	25.1%	37%	151 bp	9%	19.0
H2MF5DSXF_l02_n02_ECA3528_POOLRET87	24.1%	37%	151 bp	9%	20.4
H2MF5DSXF_l02_n02_ECA3601_POOLRET87	22.0%	37%	151 bp	9%	14.3
H2MF5DSXF_l02_n02_ECA3602_POOLRET87	22.7%	37%	151 bp	9%	14.0
H2MF5DSXF_l02_n02_ECA3603_POOLRET87	23.3%	37%	151 bp	9%	17.1
H2MF5DSXF_l02_n02_ECA3604_POOLRET87	21.0%	36%	151 bp	9%	10.9
H2MF5DSXF_l02_n02_ECA3605_POOLRET87	23.4%	37%	151 bp	9%	17.7
H2MF5DSXF_l02_n02_ECA3606_POOLRET87	22.5%	37%	151 bp	9%	15.6
H2MF5DSXF_l02_n02_ECA3607_POOLRET87	22.1%	36%	151 bp	9%	12.7
H2MF5DSXF_l02_n02_ECA3609_POOLRET87	19.9%	37%	151 bp	9%	13.4
H2MF5DSXF_l02_n02_ECA3610_POOLRET87	23.6%	37%	151 bp	9%	17.0
H2MF5DSXF_l02_n02_ECA3611_POOLRET87	22.5%	37%	151 bp	9%	13.4
H2MF5DSXF_l02_n02_ECA3629_POOLRET87	25.5%	39%	151 bp	9%	28.1
H2MF5DSXF_l02_n02_ECA3630_POOLRET87	22.0%	37%	151 bp	9%	10.1
H2MF5DSXF_l02_n02_ECA3631_POOLRET87	23.7%	38%	151 bp	9%	13.3
H2MF5DSXF_l02_n02_ECA3632_POOLRET87	23.1%	37%	151 bp	9%	18.5
H2MF5DSXF_l02_n02_ECA3633_POOLRET87	23.2%	39%	151 bp	9%	14.5
H2MF5DSXF_l02_n02_ECA3634_POOLRET87	24.9%	37%	151 bp	9%	14.8
H2MF5DSXF_l02_n02_ECA3635_POOLRET87	26.4%	37%	151 bp	9%	21.2
H2MF5DSXF_l02_n02_ECA3637_POOLRET87	23.5%	37%	151 bp	9%	12.9
H2MF5DSXF_l02_n02_ECA3638_POOLRET87	24.5%	37%	151 bp	9%	19.9
H2MF5DSXF_l02_n02_ECA3639_POOLRET87	23.6%	39%	151 bp	9%	14.9
H2MF5DSXF_l02_n02_ECA3640_POOLRET87	25.4%	37%	151 bp	9%	17.1
H2MF5DSXF_l02_n02_ECA3641_POOLRET87	22.5%	37%	151 bp	9%	11.4
H2MF5DSXF_l02_n02_ECA3642_POOLRET87	21.4%	38%	151 bp	9%	10.0
H2MF5DSXF_l02_n02_ECA3643_POOLRET87	24.9%	37%	151 bp	9%	19.0
H2MF5DSXF_l02_n02_ECA3644_POOLRET87	23.6%	37%	151 bp	9%	16.5
H2MF5DSXF_l02_n02_ECA3645_POOLRET87	24.6%	37%	151 bp	9%	21.3
H2MF5DSXF_l02_n02_ECA3646_POOLRET87	25.5%	37%	151 bp	9%	18.7
H2MF5DSXF_l02_n02_ECA3647_POOLRET87	25.2%	37%	151 bp	9%	14.6
H2MF5DSXF_l02_n02_ECA3648_POOLRET87	23.7%	38%	151 bp	9%	13.8
H2MF5DSXF_l02_n02_ECA3649_POOLRET87	23.6%	39%	151 bp	9%	14.1
H2MF5DSXF_l02_n02_ECA3650_POOLRET87	22.4%	39%	151 bp	9%	12.1
H2MF5DSXF_l02_n02_ECA3651_POOLRET87	24.1%	39%	151 bp	9%	17.3
H2MF5DSXF_l02_n02_ECA3652_POOLRET87	24.3%	39%	151 bp	9%	16.6
H2MF5DSXF_l02_n02_ECA3653_POOLRET87	24.3%	39%	151 bp	9%	17.0
H2MF5DSXF_l02_n02_ECA3654_POOLRET87	24.4%	37%	151 bp	9%	15.2
H2MF5DSXF_l02_n02_ECA3655_POOLRET87	26.0%	39%	151 bp	9%	20.7
H2MF5DSXF_l02_n02_ECA3656_POOLRET87	24.2%	37%	151 bp	9%	15.2
H2MF5DSXF_l02_n02_ECA3657_POOLRET87	23.3%	39%	151 bp	9%	14.4
H2MF5DSXF_l02_n02_ECA3658_POOLRET87	25.6%	37%	151 bp	9%	18.1
H2MF5DSXF_l02_n02_ECA3659_POOLRET87	23.6%	37%	151 bp	9%	15.8
H2MF5DSXF_l02_n02_ECA3660_POOLRET87	23.3%	37%	151 bp	9%	15.0
H2MF5DSXF_l02_n02_ECA3661_POOLRET87	22.6%	38%	151 bp	9%	14.2
H2MF5DSXF_l02_n02_ECA3662_POOLRET87	22.3%	39%	151 bp	9%	9.6
H2MF5DSXF_l02_n02_ECA3663_POOLRET87	24.6%	37%	151 bp	9%	15.2
H2MF5DSXF_l02_n02_ECA3664_POOLRET87	24.0%	37%	151 bp	9%	13.7
H2MF5DSXF_l02_n02_ECA3665_POOLRET87	23.4%	37%	151 bp	9%	14.5
H2MF5DSXF_l02_n02_ECA3666_POOLRET87	24.3%	37%	151 bp	9%	19.1
H2MF5DSXF_l02_n02_ECA3667_POOLRET87	23.2%	37%	151 bp	9%	16.4
H2MF5DSXF_l02_n02_ECA3668_POOLRET87	26.4%	38%	151 bp	9%	24.0
H2MF5DSXF_l02_n02_ECA3669_POOLRET87	25.6%	39%	151 bp	9%	22.1
H2MF5DSXF_l02_n02_ECA3670_POOLRET87	23.1%	37%	151 bp	9%	15.0
H2MF5DSXF_l02_n02_ECA3671_POOLRET87	25.5%	38%	151 bp	9%	15.4
H2MF5DSXF_l02_n02_ECA3672_POOLRET87	23.3%	37%	151 bp	9%	17.8
H2MF5DSXF_l02_n02_ECA3673_POOLRET87	22.4%	36%	151 bp	9%	17.6
H2MF5DSXF_l02_n02_ECA3674_POOLRET87	24.8%	38%	151 bp	9%	17.7
H2MF5DSXF_l02_n02_ECA3675_POOLRET87	23.6%	39%	151 bp	9%	13.9
H2MF5DSXF_l02_n02_ECA3676_POOLRET87	24.5%	36%	151 bp	9%	15.5
H2MF5DSXF_l02_n02_ECA3677_POOLRET87	24.8%	37%	151 bp	9%	15.4
H2MF5DSXF_l02_n02_ECA3678_POOLRET87	20.9%	37%	151 bp	9%	11.7
H2MF5DSXF_l02_n02_ECA3679_POOLRET87	23.1%	39%	151 bp	9%	15.0
H2MF5DSXF_l02_n02_ECA3680_POOLRET87	25.1%	37%	151 bp	9%	19.1
H2MF5DSXF_l02_n02_ECA3681_POOLRET87	25.9%	39%	151 bp	9%	16.8
H2MF5DSXF_l02_n02_ECA3682_POOLRET87	24.4%	37%	151 bp	9%	16.2
H2MF5DSXF_l02_n02_ECA3683_POOLRET87	22.9%	40%	151 bp	9%	13.2
H2MF5DSXF_l02_n02_ECA3684_POOLRET87	22.8%	37%	151 bp	9%	16.6
H2MF5DSXF_l02_n02_ECA3685_POOLRET87	22.4%	38%	151 bp	9%	12.6
H2MF5DSXF_l02_n02_ECA3686_POOLRET87	23.2%	37%	151 bp	9%	16.8
H2MF5DSXF_l02_n02_ECA3687_POOLRET87	22.4%	38%	151 bp	9%	15.8
H2MF5DSXF_l02_n02_ECA3688_POOLRET87	20.8%	37%	151 bp	9%	12.1
H2MF5DSXF_l02_n02_ECA3689_POOLRET87	23.1%	37%	151 bp	9%	17.9
H2MF5DSXF_l02_n02_ECA3698_POOLRET87	23.2%	38%	151 bp	9%	17.1
H2MF5DSXF_l02_n02_ECA3699_POOLRET87	24.7%	37%	151 bp	9%	24.7
H2MF5DSXF_l02_n02_ECA3700_POOLRET87	24.7%	38%	151 bp	9%	16.2
H2MF5DSXF_l02_n02_undetermined	74.3%	42%	151 bp	27%	322.7

Uncheck the tick box to hide columns. Click and drag the handle on the left to change order.

Sort	Group	Column	Description	ID	Scale
\|\|	FastQC	% Dups	% Duplicate Reads	`percent_duplicates`	None
\|\|	FastQC	% GC	Average % GC Content	`percent_gc`	None
\|\|	FastQC	Length	Average Sequence Length (bp)	`avg_sequence_length`	None
\|\|	FastQC	% Failed	Percentage of modules failed in FastQC report (includes those not plotted here)	`percent_fails`	None
\|\|	FastQC	M Seqs	Total Sequences (millions)	`total_sequences`	read_count

Demultiplexing Report

Total Read Count: Total number of PF (Passing Filter) reads in this library.
Portion: The proportion of reads that represent the individual library in the entire Library Pool.

Showing ¹⁹³/₁₉₃ rows and ²/₂ columns.

Library	Total Read Count	Portion (%)
ECA2119_282_POOLRET87	17298109	0.5
ECA2119_287_POOLRET87	17440516	0.5
ECA2969_POOLRET87	14502617	0.4
ECA2976_POOLRET87	13886540	0.4
ECA2978_POOLRET87	20594503	0.6
ECA2979_POOLRET87	18943951	0.6
ECA2980_POOLRET87	14865576	0.4
ECA2984_POOLRET87	13604812	0.4
ECA2990_POOLRET87	9122654	0.3
ECA2991_POOLRET87	11002466	0.3
ECA2993_POOLRET87	14906586	0.4
ECA2994_POOLRET87	10787489	0.3
ECA2995_POOLRET87	12418730	0.4
ECA2996_POOLRET87	13622686	0.4
ECA2997_POOLRET87	13689853	0.4
ECA2998_POOLRET87	15150586	0.4
ECA2999_POOLRET87	13531886	0.4
ECA3000_POOLRET87	11004599	0.3
ECA3001_POOLRET87	16046874	0.5
ECA3003_POOLRET87	13654954	0.4
ECA3004_POOLRET87	15652350	0.5
ECA3008_POOLRET87	14940420	0.4
ECA3009_POOLRET87	16076722	0.5
ECA3010_POOLRET87	14822802	0.4
ECA3011_POOLRET87	19062221	0.6
ECA3013_POOLRET87	10601707	0.3
ECA3014_POOLRET87	18284989	0.5
ECA3015_POOLRET87	24352624	0.7
ECA3017_POOLRET87	14832503	0.4
ECA3018_POOLRET87	13134071	0.4
ECA3019_POOLRET87	15393879	0.5
ECA3021_POOLRET87	14926338	0.4
ECA3022_POOLRET87	15176945	0.4
ECA3026_POOLRET87	12259822	0.4
ECA3027_POOLRET87	15598194	0.5
ECA3039_POOLRET87	18740455	0.6
ECA3044_POOLRET87	15305087	0.5
ECA3046_POOLRET87	17321059	0.5
ECA3048_POOLRET87	14463198	0.4
ECA3050_POOLRET87	9862714	0.3
ECA3051_POOLRET87	16984773	0.5
ECA3052_POOLRET87	9562513	0.3
ECA3056_POOLRET87	10548468	0.3
ECA3058_POOLRET87	18530204	0.5
ECA3059_POOLRET87	17006127	0.5
ECA3060_POOLRET87	12689894	0.4
ECA3061_POOLRET87	19221413	0.6
ECA3063_POOLRET87	15307137	0.5
ECA3064_POOLRET87	13131680	0.4
ECA3067_POOLRET87	10925147	0.3
ECA3068_POOLRET87	15519841	0.5
ECA3069_POOLRET87	11146648	0.3
ECA3070_POOLRET87	14108285	0.4
ECA3071_POOLRET87	16034138	0.5
ECA3072_POOLRET87	13846944	0.4
ECA3074_POOLRET87	15320451	0.5
ECA3075_POOLRET87	19443525	0.6
ECA3076_POOLRET87	11630877	0.3
ECA3078_POOLRET87	13618368	0.4
ECA3079_POOLRET87	13844544	0.4
ECA3080_POOLRET87	17117249	0.5
ECA3081_POOLRET87	16527017	0.5
ECA3082_POOLRET87	15015159	0.4
ECA3083_POOLRET87	12699712	0.4
ECA3084_POOLRET87	16346640	0.5
ECA3086_POOLRET87	15982612	0.5
ECA3090_POOLRET87	16935382	0.5
ECA3093_POOLRET87	20181464	0.6
ECA3109_POOLRET87	17190542	0.5
ECA3123_POOLRET87	14858863	0.4
ECA3126_POOLRET87	10210627	0.3
ECA3127_POOLRET87	12019144	0.4
ECA3132_POOLRET87	15022051	0.4
ECA3133_POOLRET87	11519856	0.3
ECA3134_POOLRET87	7832171	0.2
ECA3135_POOLRET87	18724222	0.6
ECA3136_POOLRET87	19624665	0.6
ECA3138_POOLRET87	15933533	0.5
ECA3139_POOLRET87	13030154	0.4
ECA3140_POOLRET87	15100766	0.4
ECA3157_POOLRET87	14925436	0.4
ECA3199_POOLRET87	15283990	0.5
ECA3205_POOLRET87	15462907	0.5
ECA3208_POOLRET87	18695043	0.6
ECA3493_POOLRET87	11976793	0.4
ECA3494_POOLRET87	16804990	0.5
ECA3495_POOLRET87	14569938	0.4
ECA3496_POOLRET87	20391155	0.6
ECA3497_POOLRET87	13369587	0.4
ECA3498_POOLRET87	17497003	0.5
ECA3499_POOLRET87	11558921	0.3
ECA3500_POOLRET87	17783252	0.5
ECA3501_POOLRET87	15185350	0.5
ECA3502_POOLRET87	17830414	0.5
ECA3503_POOLRET87	17920401	0.5
ECA3504_POOLRET87	27207212	0.8
ECA3505_POOLRET87	21208710	0.6
ECA3506_POOLRET87	16937156	0.5
ECA3507_POOLRET87	22558089	0.7
ECA3508_POOLRET87	13517329	0.4
ECA3509_POOLRET87	27422218	0.8
ECA3510_POOLRET87	21746217	0.6
ECA3511_POOLRET87	26790555	0.8
ECA3513_POOLRET87	15598411	0.5
ECA3514_POOLRET87	13518544	0.4
ECA3515_POOLRET87	21795826	0.6
ECA3516_POOLRET87	23755193	0.7
ECA3517_POOLRET87	16039618	0.5
ECA3518_POOLRET87	18696708	0.6
ECA3519_POOLRET87	13807572	0.4
ECA3520_POOLRET87	14357103	0.4
ECA3521_POOLRET87	15207477	0.5
ECA3522_POOLRET87	15374480	0.5
ECA3523_POOLRET87	19608168	0.6
ECA3524_POOLRET87	21924825	0.6
ECA3525_POOLRET87	15485108	0.5
ECA3526_POOLRET87	18877850	0.6
ECA3527_POOLRET87	19036229	0.6
ECA3528_POOLRET87	20398871	0.6
ECA3601_POOLRET87	14321527	0.4
ECA3602_POOLRET87	14003891	0.4
ECA3603_POOLRET87	17063903	0.5
ECA3604_POOLRET87	10935283	0.3
ECA3605_POOLRET87	17686630	0.5
ECA3606_POOLRET87	15568482	0.5
ECA3607_POOLRET87	12714157	0.4
ECA3609_POOLRET87	13378874	0.4
ECA3610_POOLRET87	17015215	0.5
ECA3611_POOLRET87	13411927	0.4
ECA3629_POOLRET87	28080509	0.8
ECA3630_POOLRET87	10106873	0.3
ECA3631_POOLRET87	13331409	0.4
ECA3632_POOLRET87	18469100	0.5
ECA3633_POOLRET87	14492102	0.4
ECA3634_POOLRET87	14819312	0.4
ECA3635_POOLRET87	21179138	0.6
ECA3637_POOLRET87	12857161	0.4
ECA3638_POOLRET87	19850005	0.6
ECA3639_POOLRET87	14944135	0.4
ECA3640_POOLRET87	17102369	0.5
ECA3641_POOLRET87	11400507	0.3
ECA3642_POOLRET87	10002453	0.3
ECA3643_POOLRET87	19023509	0.6
ECA3644_POOLRET87	16484355	0.5
ECA3645_POOLRET87	21313220	0.6
ECA3646_POOLRET87	18703611	0.6
ECA3647_POOLRET87	14586358	0.4
ECA3648_POOLRET87	13782061	0.4
ECA3649_POOLRET87	14099950	0.4
ECA3650_POOLRET87	12083831	0.4
ECA3651_POOLRET87	17349409	0.5
ECA3652_POOLRET87	16587583	0.5
ECA3653_POOLRET87	17008277	0.5
ECA3654_POOLRET87	15185646	0.5
ECA3655_POOLRET87	20657478	0.6
ECA3656_POOLRET87	15151330	0.4
ECA3657_POOLRET87	14350422	0.4
ECA3658_POOLRET87	18084820	0.5
ECA3659_POOLRET87	15756613	0.5
ECA3660_POOLRET87	14992717	0.4
ECA3661_POOLRET87	14171284	0.4
ECA3662_POOLRET87	9587455	0.3
ECA3663_POOLRET87	15247322	0.5
ECA3664_POOLRET87	13674656	0.4
ECA3665_POOLRET87	14463085	0.4
ECA3666_POOLRET87	19095005	0.6
ECA3667_POOLRET87	16376117	0.5
ECA3668_POOLRET87	23955818	0.7
ECA3669_POOLRET87	22081044	0.7
ECA3670_POOLRET87	15020743	0.4
ECA3671_POOLRET87	15444533	0.5
ECA3672_POOLRET87	17761252	0.5
ECA3673_POOLRET87	17552563	0.5
ECA3674_POOLRET87	17715117	0.5
ECA3675_POOLRET87	13933888	0.4
ECA3676_POOLRET87	15469552	0.5
ECA3677_POOLRET87	15404225	0.5
ECA3678_POOLRET87	11703443	0.3
ECA3679_POOLRET87	15004607	0.4
ECA3680_POOLRET87	19091317	0.6
ECA3681_POOLRET87	16832449	0.5
ECA3682_POOLRET87	16168049	0.5
ECA3683_POOLRET87	13153386	0.4
ECA3684_POOLRET87	16589224	0.5
ECA3685_POOLRET87	12574119	0.4
ECA3686_POOLRET87	16775356	0.5
ECA3687_POOLRET87	15832794	0.5
ECA3688_POOLRET87	12107422	0.4
ECA3689_POOLRET87	17905938	0.5
ECA3698_POOLRET87	17137157	0.5
ECA3699_POOLRET87	24690202	0.7
ECA3700_POOLRET87	16183565	0.5
undetermined	322723757	9.6

Uncheck the tick box to hide columns. Click and drag the handle on the left to change order.

Sort	Visible	Group	Column	Description	ID	Scale
\|\|			Total Read Count	Total Read Count	`Total Read Count`	None
\|\|			Portion (%)	Portion (%)	`Portion (%)`	None

Barcodes of Undetermined Reads

We have determined the barcodes of your undetermined reads. Here are the top 20 barcodes. The full list is available here.

Showing ²⁰/₂₀ rows and ²/₂ columns.

Barcode Sequence(s)	Count	Frequency (%)
GGGGGGGG-AGATCTCG	220513617.0	68.3
CAGTTCAA-GGCGTTAT	807531.0	0.2
TCGTCTGA-GGGGGGGG	774035.0	0.2
GAAGCCTA-ATACTGAC	358978.0	0.1
GGGGGGGG-CGATCTCG	338850.0	0.1
TCTGGAAC-AGTGCTAG	333927.0	0.1
GGGGGGGG-NGATCTCG	332487.0	0.1
GGGGGGGG-GGGGGGGG	260881.0	0.1
TCACGCCA-AGGAACAT	257720.0	0.1
CGAGAGAA-GGGGGGGG	236874.0	0.1
GGGGGGGG-GACTGCTG	231415.0	0.1
CCAAGGTT-GGGGGGGG	230257.0	0.1
GGGGGGGG-GATAGGCT	202797.0	0.1
GGGGGGGG-ACGGTCTT	195103.0	0.1
GACACAAA-TCGTCAAG	177608.0	0.1
GGGGGGGG-TCAAGGAC	176718.0	0.1
GGGGGGGG-CAAGGTCT	169950.0	0.1
GGGGGGGG-CTAGCAAG	161278.0	0.1
GGGGGGGG-GCCTATCA	158228.0	0.1
GGGGGGGG-GTGCCATA	157483.0	0.1

Uncheck the tick box to hide columns. Click and drag the handle on the left to change order.

Sort	Visible	Group	Column	Description	ID	Scale
\|\|			Count	Count	`Count`	None
\|\|			Frequency (%)	Frequency (%)	`Frequency (%)`	None

Run Statistics

Showing ¹/₁ rows and ⁴/₄ columns.

Lane	Total # of Single-End Reads	Total # PF Reads	% Undetermined	% PhiX Aligned
2.0	3830022144	3376664138	9.6	6.5

Uncheck the tick box to hide columns. Click and drag the handle on the left to change order.

Sort	Column	Description	ID	Scale
\|\|	Total # of Single-End Reads	Total # of Single-End Reads	`Total # of Single-End Reads`	None
\|\|	Total # PF Reads	Total # PF Reads	`Total # PF Reads`	None
\|\|	% Undetermined	% Undetermined	`% Undetermined`	None
\|\|	% PhiX Aligned	% PhiX Aligned	`% PhiX Aligned`	None

FastQC

FastQC is a quality control tool for high throughput sequence data, written by Simon Andrews at the Babraham Institute in Cambridge.

Sequence Counts

Sequence counts for each sample. Duplicate read counts are an estimate only.

This plot show the total number of reads, broken down into unique and duplicate if possible (only more recent versions of FastQC give duplicate info).

You can read more about duplicate calculation in the FastQC documentation. A small part has been copied here for convenience:

Only sequences which first appear in the first 100,000 sequences in each file are analysed. This should be enough to get a good impression for the duplication levels in the whole file. Each sequence is tracked to the end of the file to give a representative count of the overall duplication level.

The duplication detection requires an exact sequence match over the whole length of the sequence. Any reads over 75bp in length are truncated to 50bp for this analysis.

Flat image plot. Toolbox functions such as highlighting / hiding samples will not work (see the docs).

Sequence Quality Histograms

The mean quality value across each base position in the read.

To enable multiple samples to be plotted on the same graph, only the mean quality scores are plotted (unlike the box plots seen in FastQC reports).

Taken from the FastQC help:

The y-axis on the graph shows the quality scores. The higher the score, the better the base call. The background of the graph divides the y axis into very good quality calls (green), calls of reasonable quality (orange), and calls of poor quality (red). The quality of calls on most platforms will degrade as the run progresses, so it is common to see base calls falling into the orange area towards the end of a read.

Flat image plot. Toolbox functions such as highlighting / hiding samples will not work (see the docs).

Per Sequence Quality Scores

The number of reads with average quality scores. Shows if a subset of reads has poor quality.

From the FastQC help:

The per sequence quality score report allows you to see if a subset of your sequences have universally low quality values. It is often the case that a subset of sequences will have universally poor quality, however these should represent only a small percentage of the total sequences.

Flat image plot. Toolbox functions such as highlighting / hiding samples will not work (see the docs).

Per Base Sequence Content

The proportion of each base position for which each of the four normal DNA bases has been called.

To enable multiple samples to be shown in a single plot, the base composition data is shown as a heatmap. The colours represent the balance between the four bases: an even distribution should give an even muddy brown colour. Hover over the plot to see the percentage of the four bases under the cursor.

To see the data as a line plot, as in the original FastQC graph, click on a sample track.

From the FastQC help:

Per Base Sequence Content plots out the proportion of each base position in a file for which each of the four normal DNA bases has been called.

In a random library you would expect that there would be little to no difference between the different bases of a sequence run, so the lines in this plot should run parallel with each other. The relative amount of each base should reflect the overall amount of these bases in your genome, but in any case they should not be hugely imbalanced from each other.

It's worth noting that some types of library will always produce biased sequence composition, normally at the start of the read. Libraries produced by priming using random hexamers (including nearly all RNA-Seq libraries) and those which were fragmented using transposases inherit an intrinsic bias in the positions at which reads start. This bias does not concern an absolute sequence, but instead provides enrichement of a number of different K-mers at the 5' end of the reads. Whilst this is a true technical bias, it isn't something which can be corrected by trimming and in most cases doesn't seem to adversely affect the downstream analysis.

Click a sample row to see a line plot for that dataset.

Rollover for sample name

Position: -

%T: -

%C: -

%A: -

%G: -

Per Sequence GC Content

The average GC content of reads. Normal random library typically have a roughly normal distribution of GC content.

From the FastQC help:

This module measures the GC content across the whole length of each sequence in a file and compares it to a modelled normal distribution of GC content.

In a normal random library you would expect to see a roughly normal distribution of GC content where the central peak corresponds to the overall GC content of the underlying genome. Since we don't know the the GC content of the genome the modal GC content is calculated from the observed data and used to build a reference distribution.

An unusually shaped distribution could indicate a contaminated library or some other kinds of biased subset. A normal distribution which is shifted indicates some systematic bias which is independent of base position. If there is a systematic bias which creates a shifted normal distribution then this won't be flagged as an error by the module since it doesn't know what your genome's GC content should be.

Flat image plot. Toolbox functions such as highlighting / hiding samples will not work (see the docs).

Per Base N Content

The percentage of base calls at each position for which an N was called.

From the FastQC help:

If a sequencer is unable to make a base call with sufficient confidence then it will normally substitute an N rather than a conventional base call. This graph shows the percentage of base calls at each position for which an N was called.

It's not unusual to see a very low proportion of Ns appearing in a sequence, especially nearer the end of a sequence. However, if this proportion rises above a few percent it suggests that the analysis pipeline was unable to interpret the data well enough to make valid base calls.

Flat image plot. Toolbox functions such as highlighting / hiding samples will not work (see the docs).

Sequence Length Distribution

All samples have sequences of a single length (151bp).

Sequence Duplication Levels

The relative level of duplication found for every sequence.

From the FastQC Help:

In a diverse library most sequences will occur only once in the final set. A low level of duplication may indicate a very high level of coverage of the target sequence, but a high level of duplication is more likely to indicate some kind of enrichment bias (eg PCR over amplification). This graph shows the degree of duplication for every sequence in a library: the relative number of sequences with different degrees of duplication.

The duplication detection requires an exact sequence match over the whole length of the sequence. Any reads over 75bp in length are truncated to 50bp for this analysis.

In a properly diverse library most sequences should fall into the far left of the plot in both the red and blue lines. A general level of enrichment, indicating broad oversequencing in the library will tend to flatten the lines, lowering the low end and generally raising other categories. More specific enrichments of subsets, or the presence of low complexity contaminants will tend to produce spikes towards the right of the plot.

Flat image plot. Toolbox functions such as highlighting / hiding samples will not work (see the docs).

Overrepresented sequences

The total amount of overrepresented sequences found in each library.

FastQC calculates and lists overrepresented sequences in FastQ files. It would not be possible to show this for all samples in a MultiQC report, so instead this plot shows the number of sequences categorized as over represented.

Sometimes, a single sequence may account for a large number of reads in a dataset. To show this, the bars are split into two: the first shows the overrepresented reads that come from the single most common sequence. The second shows the total count from all remaining overrepresented sequences.

From the FastQC Help:

A normal high-throughput library will contain a diverse set of sequences, with no individual sequence making up a tiny fraction of the whole. Finding that a single sequence is very overrepresented in the set either means that it is highly biologically significant, or indicates that the library is contaminated, or not as diverse as you expected.

FastQC lists all of the sequences which make up more than 0.1% of the total. To conserve memory only sequences which appear in the first 100,000 sequences are tracked to the end of the file. It is therefore possible that a sequence which is overrepresented but doesn't appear at the start of the file for some reason could be missed by this module.

386 samples had less than 1% of reads made up of overrepresented sequences

Adapter Content

The cumulative percentage count of the proportion of your library which has seen each of the adapter sequences at each position.

Note that only samples with ≥ 0.1% adapter contamination are shown.

There may be several lines per sample, as one is shown for each adapter detected in the file.

From the FastQC Help:

The plot shows a cumulative percentage count of the proportion of your library which has seen each of the adapter sequences at each position. Once a sequence has been seen in a read it is counted as being present right through to the end of the read so the percentages you see will only increase as the read length goes on.

Flat image plot. Toolbox functions such as highlighting / hiding samples will not work (see the docs).

Status Checks

Status for each FastQC section showing whether results seem entirely normal (green), slightly abnormal (orange) or very unusual (red).

FastQC assigns a status for each section of the report. These give a quick evaluation of whether the results of the analysis seem entirely normal (green), slightly abnormal (orange) or very unusual (red).

It is important to stress that although the analysis results appear to give a pass/fail result, these evaluations must be taken in the context of what you expect from your library. A 'normal' sample as far as FastQC is concerned is random and diverse. Some experiments may be expected to produce libraries which are biased in particular ways. You should treat the summary evaluations therefore as pointers to where you should concentrate your attention and understand why your library may not look random and diverse.

Specific guidance on how to interpret the output of each module can be found in the relevant report section, or in the FastQC help.

In this heatmap, we summarise all of these into a single heatmap for a quick overview. Note that not all FastQC sections have plots in MultiQC reports, but all status checks are shown in this heatmap.

v1.9

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General Statistics

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Per Sequence Quality Scores

Per Base Sequence Content

Rollover for sample name

Per Sequence GC Content

Per Base N Content

Sequence Length Distribution

Sequence Duplication Levels

Overrepresented sequences

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Status Checks

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General Statistics

General Statistics: Columns

Demultiplexing Report

Table Iclk: Columns

Barcodes of Undetermined Reads

Table Gzln: Columns

Run Statistics

Table Rvcb: Columns

FastQC

Sequence Counts Help

Sequence Quality Histograms Help

Per Sequence Quality Scores Help

Per Base Sequence Content Help

Rollover for sample name

Per Sequence GC Content Help

Per Base N Content Help

Sequence Length Distribution

Sequence Duplication Levels Help

Overrepresented sequences Help

Adapter Content Help

Status Checks Help

v1.9

Highlight Samples

Rename Samples

Show / Hide Samples

Sequence Counts

Sequence Quality Histograms

Per Sequence Quality Scores

Per Base Sequence Content

Per Sequence GC Content

Per Base N Content

Sequence Duplication Levels

Overrepresented sequences

Adapter Content

Status Checks