FastQCFastQC Report
Fri 9 Feb 2018
H2LMFBGX5_n01_atac_whole_root_col-0_1.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameH2LMFBGX5_n01_atac_whole_root_col-0_1.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences94183528
Sequences flagged as poor quality0
Sequence length75
%GC48

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[FAIL]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TATACCG241750.026.4412735
AATCTCG577450.022.36776469
TAGGCGG462200.022.099524
ATACCGC228650.021.649936
GCACGCC461700.021.22892230
TCGCGCG88400.020.914729
GCGGATC496200.019.770267
CTAAGGC4319100.019.26846769
ACTAAGG5825550.018.57498769
GTCGCGC95550.018.0861118
GGCGGAT585750.017.6443336
TAGACAG223000.017.573045
ACGAAGC575400.017.43410125
TATACTA152700.017.3950634
GCCCATC497400.017.38747434
GAAGCAC583150.017.22731227
GAATCTC943450.017.1761769
CGAAGCA586050.017.1713826
TAAGGCG3052200.017.1487569
TACCGCC277000.017.0725047
Produced by FastQC (version 0.11.2)