FastQCFastQC Report
Thu 18 Jan 2024
H2L2LDSXC_l04_n01_A_QG3502.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameH2L2LDSXC_l04_n01_A_QG3502.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences16994783
Sequences flagged as poor quality0
Sequence length151
%GC43

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCTTAGGCTTAGGCTTAGGCTTAGGCTTAGGCTTAGGCTTAGGCTTAGG270540.15919002908127747No Hit
CTTAGGCTTAGGCTTAGGCTTAGGCTTAGGCTTAGGCTTAGGCTTAGGCT264350.15554773485486692No Hit
CCTAAGCCTAAGCCTAAGCCTAAGCCTAAGCCTAAGCCTAAGCCTAAGCC236750.1393074568825033No Hit
GCCTAAGCCTAAGCCTAAGCCTAAGCCTAAGCCTAAGCCTAAGCCTAAGC236440.13912504796324848No Hit
GCTTAGGCTTAGGCTTAGGCTTAGGCTTAGGCTTAGGCTTAGGCTTAGGC230020.13534741808706824No Hit
CTAAGCCTAAGCCTAAGCCTAAGCCTAAGCCTAAGCCTAAGCCTAAGCCT212340.12494422553085849No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)