FastQCFastQC Report
Thu 18 Jan 2024
H2L2LDSXC_l04_n01_A_QG3474.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameH2L2LDSXC_l04_n01_A_QG3474.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences24643270
Sequences flagged as poor quality0
Sequence length151
%GC43

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCTTAGGCTTAGGCTTAGGCTTAGGCTTAGGCTTAGGCTTAGGCTTAGG347390.14096749335619826No Hit
CTTAGGCTTAGGCTTAGGCTTAGGCTTAGGCTTAGGCTTAGGCTTAGGCT332320.13485223349011718No Hit
CCTAAGCCTAAGCCTAAGCCTAAGCCTAAGCCTAAGCCTAAGCCTAAGCC325800.13220648071461297No Hit
GCCTAAGCCTAAGCCTAAGCCTAAGCCTAAGCCTAAGCCTAAGCCTAAGC319870.12980014421787367No Hit
CTAAGCCTAAGCCTAAGCCTAAGCCTAAGCCTAAGCCTAAGCCTAAGCCT293070.11892496409770294No Hit
GCTTAGGCTTAGGCTTAGGCTTAGGCTTAGGCTTAGGCTTAGGCTTAGGC292530.11870583733408756No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)