FastQCFastQC Report
Thu 18 Jan 2024
H2L2LDSXC_l03_n01_A_QG3338.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameH2L2LDSXC_l03_n01_A_QG3338.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences26113334
Sequences flagged as poor quality0
Sequence length151
%GC42

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GATCGGAAGAGCACACGTCTGAACTCCAGTCACGCTGATTTATCTCGTAT657220.25167985060812226TruSeq Adapter, Index 25 (97% over 39bp)
GATCGGAAGAGCACACGTCTGAACTCCAGTCACGCTGATTTATCGCGTAT316780.12130967267527004TruSeq Adapter, Index 25 (97% over 39bp)

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)