FastQCFastQC Report
Thu 31 May 2018
H2KT5AFXY_n01_ah9724i-0518.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameH2KT5AFXY_n01_ah9724i-0518.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences6805808
Sequences flagged as poor quality0
Sequence length101
%GC39

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
AGTCACG28100.09.55006228-29
GTTTCGG31300.08.80125434-35
CCAGTCA39400.07.35358826-27
CGTATGC24650.06.93659746-47
CACGTCT41100.06.7604414-15
TGCCGTC19950.06.666164450-51
CGGGGGG5801.8075934E-56.55200176-77
AAGGGGG25800.06.53605674-75
CACACGT42600.06.522396612-13
CGTCTGA43550.06.434694316-17
CTCGTAT26900.06.09154944-45
ACGTTTC48000.06.08547932-33
TCACGTT48600.06.01039430-31
TTCGGAA51100.05.855723436-37
CTCCAGT52100.05.606686624-25
AGCACAC52050.05.383840610-11
TGAACTC53850.05.33629920-21
CGTTTCG27750.05.305906332-33
CGGAATC46600.05.3000338-39
TATGCCG31450.05.210259448-49
Produced by FastQC (version 0.11.2)