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If you use plots from MultiQC in a publication or presentation, please cite:

MultiQC: Summarize analysis results for multiple tools and samples in a single report
Philip Ewels, Måns Magnusson, Sverker Lundin and Max Käller
Bioinformatics (2016)
doi: 10.1093/bioinformatics/btw354
PMID: 27312411

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About MultiQC

This report was generated using MultiQC, version 1.9

You can see a YouTube video describing how to use MultiQC reports here: https://youtu.be/qPbIlO_KWN0

For more information about MultiQC, including other videos and extensive documentation, please visit http://multiqc.info

You can report bugs, suggest improvements and find the source code for MultiQC on GitHub: https://github.com/ewels/MultiQC

MultiQC is published in Bioinformatics:

MultiQC: Summarize analysis results for multiple tools and samples in a single report
Philip Ewels, Måns Magnusson, Sverker Lundin and Max Käller
Bioinformatics (2016)
doi: 10.1093/bioinformatics/btw354
PMID: 27312411

A modular tool to aggregate results from bioinformatics analyses across many samples into a single report.

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Report generated on 2022-09-01, 20:31 based on data in: /scratch/gencore/logs/html/H2KNWDSX5/merged

Barcodes of Undetermined Reads

We have determined the barcodes of your undetermined reads (reads containing a barcode that you did not encode in your metadata). Here are the top 20 barcodes belonging to the undetermined reads. The full list is available here.

Showing ²⁰/₂₀ rows and ²/₂ columns.

Barcode Sequence(s)	Count	Frequency (%)
GGGGGGGAGATCTC	2280625994.0	76.6
GGGGGGGTGCGTCC	33348654.0	1.1
GGGGGGGCTCTGCA	16855526.0	0.6
GGGGGGGCCGGTAC	11120018.0	0.4
GGGGGGGGCTCGAA	10550057.0	0.3
GGGGGGGGCATTGG	7367726.0	0.2
AGACTCCTGCGTCC	6853512.0	0.2
GGGGGGGGCAAGAT	6639047.0	0.2
GGGGGGGATGGAGA	6250955.0	0.2
GGGGGGGTTGAAGT	5958006.0	0.2
CCTAACGTGCGTCC	5708593.0	0.2
CCTTAATTGCGTCC	5648645.0	0.2
GGGGGGGGAATCTC	5605968.0	0.2
GGGGGGGNGATCTC	5209100.0	0.2
ATCATAATGCGTCC	5120523.0	0.2
GGGGGGGGGATCAA	5108533.0	0.2
GTTACCGTGCGTCC	5072536.0	0.2
AGCGCCATGCGTCC	4968216.0	0.2
GGGGGGGTTGGATC	4826282.0	0.2
GGGGGGGCCTAGGT	4661818.0	0.2

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Sort	Visible	Group	Column	Description	ID	Scale
\|\|			Count	Count	`Count`	None
\|\|			Frequency (%)	Frequency (%)	`Frequency (%)`	None

Demultiplexing Report

Total Read Count: Total number of PF (Passing Filter) reads in this library.
Portion: The proportion of reads that represent the individual library in the entire Library Pool.

Showing ⁹⁷/₉₇ rows and ²/₂ columns.

Library	Total Read Count	Portion (%)
undetermined_library	2976980189	46.4
fHRB0014	17534034	0.3
fHRB0018	8509172	0.1
fHRB0019	35258529	0.6
fHRB0020	23656337	0.4
fHRB0022	27583277	0.4
fHRB0025	31508380	0.5
fHRB0031	18903174	0.3
fHRB0033	18094711	0.3
fHRB0065	15537755	0.2
fHRB0066	9292621	0.1
fHRB0068	37510922	0.6
fHRB0074	50174497	0.8
fHRB0075	25855085	0.4
fHRB0076	31085620	0.5
fHRB0078	38736788	0.6
fHRB0081	25134381	0.4
fHRB0082	25978775	0.4
fHRB0083	34454745	0.5
fHRB0087	39193304	0.6
fHRB0089	51736227	0.8
fHRB0090	42867296	0.7
fHRB0100	31746923	0.5
fHRB0102	27407995	0.4
fHRB0146	41034328	0.6
fHRB0147	33887008	0.5
fHRB0148	53738420	0.8
fHRB0149	36891176	0.6
fHRB0150	36357255	0.6
fHRB0151	33322556	0.5
fHRB0153	37781879	0.6
fHRB0159	32556038	0.5
fHRB0168	35656821	0.6
fHRB0169	44930518	0.7
fHRB0212	39763186	0.6
fHRB0214	26116079	0.4
fHRB0216	45486025	0.7
fHRB0217	44681981	0.7
fHRB0221	37173010	0.6
fHRB0222	33466001	0.5
fHRB0225	32517695	0.5
fHRB0226	32085824	0.5
fHRB0227	21337961	0.3
fHRB0228	38378071	0.6
fHRB0231	29144358	0.5
fHRB0234	36548830	0.6
fHRB0238	31917205	0.5
fHRB0239	27796020	0.4
fHRB0240	46916043	0.7
fHRB0241	40950834	0.6
fHRB0242	42919419	0.7
fHRB0243	41445488	0.6
fHRB0244	32542722	0.5
fHRB0245	16392057	0.3
fHRB0246	47916121	0.8
fHRB0247	48412277	0.8
fHRB0248	60608789	0.9
fHRB0110	33066284	0.5
fHRB0152	37619800	0.6
fHRB0154	33411266	0.5
fHRB0155	36873487	0.6
fHRB0215	37105140	0.6
fHRB0218	38182382	0.6
fHRB0224	48511528	0.8
fHRB0229	60419543	0.9
fHRB0230	33761848	0.5
fHRB0232	56997545	0.9
fHRB0233	51466031	0.8
fHRB0313	24956931	0.4
fHRB0314	33547842	0.5
fHRB0315	43144808	0.7
fHRB0316	32351500	0.5
fHRB0317	49741996	0.8
fHRB0318	52511549	0.8
fHRB0319	33779369	0.5
fHRB0320	32623800	0.5
fHRB0321	37788703	0.6
fHRB0322	32438650	0.5
fHRB0323	22576702	0.4
fHRB0324	28222722	0.4
fHRB0325	19690332	0.3
fHRB0326	42824204	0.7
fHRB0328	25413451	0.4
fHRB0330	34652741	0.5
fHRB0332	37797728	0.6
fHRB0333	27785926	0.4
fHRB0334	62949594	1.0
fHRB0335	39850321	0.6
fHRB0336	41144529	0.6
fHRB0337	36142458	0.6
fHRB0338	25721358	0.4
fHRB0339	36251493	0.6
fHRB0341	15590954	0.2
fHRB0342	43324372	0.7
fHRB0343	39527120	0.6
fHRB0345	36489812	0.6
fHRB0346	57430217	0.9

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Sort	Visible	Group	Column	Description	ID	Scale
\|\|			Total Read Count	Total Read Count	`Total Read Count`	None
\|\|			Portion (%)	Portion (%)	`Portion (%)`	None

Run Statistics

Showing ¹/₁ rows and ⁴/₄ columns.

Number of Lanes	Total # of Single-End Reads	Total # PF Reads	% Undetermined	% PhiX Aligned
4.0	15320088576	6399098768	46.5	37.5

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Sort	Column	Description	ID	Scale
\|\|	Total # of Single-End Reads	Total # of Single-End Reads	`Total # of Single-End Reads`	None
\|\|	Total # PF Reads	Total # PF Reads	`Total # PF Reads`	None
\|\|	% Undetermined	% Undetermined	`% Undetermined`	None
\|\|	% PhiX Aligned	% PhiX Aligned	`% PhiX Aligned`	None

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Barcodes of Undetermined Reads

Table Zsjg: Columns

Demultiplexing Report

Table Afmu: Columns

Run Statistics

Table Pfcx: Columns

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