H2KH2AFXY_n01_p3x9.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	H2KH2AFXY_n01_p3x9.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	366726
Sequences flagged as poor quality	0
Sequence length	151
%GC	47

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CCTATAAGCAACATCCGCTGATCCCTGGTCGGCATCGTTTATGGTTGAGA	666	0.18160697632564912	No Hit
GTATCTGATCGTCTTCGAGCCCCCAACTTTCGTTCTTGATTAATGAAAAC	609	0.16606403691039084	No Hit
GGATAACATCATAGGATTTCGATCCTATTGTGTTGGCCTTCGGGATCGGA	609	0.16606403691039084	No Hit
ATGTTATCCCATGCTAATGTATCCAGAGCGTAGGCTTGCTTTGAGCACTC	575	0.15679280989076314	No Hit
TCATTACTCCGATCCCGAAGGCCAACACAATAGGATCGAAATCCTATGAT	495	0.13497815807987434	No Hit
GTTTATGGTTGAGACTAGGACGGTATCTGATCGTCTTCGAGCCCCCAACT	433	0.11807180292643553	No Hit
CTCATAAGGTGCCAGCGGAGTCCTATAAGCAACATCCGCTGATCCCTGGT	401	0.10934594220208002	No Hit
TAACAATACCGGGCTCTTTCGAGTCTGGTAATTGGAATGAGTACAATCTA	391	0.10661911072571892	No Hit
ACCATACTCCCCCCGGAACCCAAAAACTTTGATTTCTCATAAGGTGCCAG	373	0.10171081406826896	No Hit
GAGTAATGATTAACAGGGACAGTCGGGGGCATTCGTATTTCATAGTCAGA	369	0.10062008147772451	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CTTCCGA	675	0.0	64.47821	1
TTCCGAT	690	0.0	64.09282	2
CCGATCT	695	0.0	62.58857	4
CGATCTG	445	0.0	53.762882	5
CGATCTA	190	3.6379788E-12	41.972775	5
GCACTAG	70	0.0010530466	41.450283	1
TCCGATC	1085	0.0	40.0913	3
TATAGTA	95	1.0277488E-4	38.157066	2
CCTACTC	235	0.0	37.020477	3
CCGTATA	80	0.0020351522	36.249218	2
GTGCATA	105	1.8457398E-4	34.5419	1
ACAGTGC	85	0.0027400232	34.11691	8
GTGCTCT	440	0.0	32.971817	1
TCTTCCG	405	0.0	32.221527	5
CTAGGGG	95	0.0047239345	30.525654	3
CTACTCA	315	1.8189894E-12	29.919987	4
GGGCGAC	155	5.491874E-5	28.063908	7
CCCATTA	105	0.007703003	27.61845	2
GTCATAT	265	4.5129127E-9	27.37283	1
CATATGC	325	5.0931703E-11	26.76865	3