H2KH2AFXY_n01_p3h11.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	H2KH2AFXY_n01_p3h11.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	155745
Sequences flagged as poor quality	0
Sequence length	151
%GC	47

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GTATCTGATCGTCTTCGAGCCCCCAACTTTCGTTCTTGATTAATGAAAAC	280	0.17978105236123149	No Hit
ATGTTATCCCATGCTAATGTATCCAGAGCGTAGGCTTGCTTTGAGCACTC	263	0.16886577418215673	No Hit
CCTATAAGCAACATCCGCTGATCCCTGGTCGGCATCGTTTATGGTTGAGA	234	0.15024559375902918	No Hit
GGATAACATCATAGGATTTCGATCCTATTGTGTTGGCCTTCGGGATCGGA	232	0.14896144338502038	No Hit
TCATTACTCCGATCCCGAAGGCCAACACAATAGGATCGAAATCCTATGAT	208	0.13355163889691482	No Hit
GTTTATGGTTGAGACTAGGACGGTATCTGATCGTCTTCGAGCCCCCAACT	179	0.11493145847378727	No Hit
GAGTAATGATTAACAGGGACAGTCGGGGGCATTCGTATTTCATAGTCAGA	173	0.11107900735176088	No Hit
TAACAATACCGGGCTCTTTCGAGTCTGGTAATTGGAATGAGTACAATCTA	170	0.1091527817907477	No Hit
CTCATAAGGTGCCAGCGGAGTCCTATAAGCAACATCCGCTGATCCCTGGT	164	0.1053003306687213	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CTTCCGA	295	0.0	68.81356	1
CGATCTG	195	0.0	63.205124	5
CCGATCT	335	0.0	62.761192	4
TTCCGAT	345	0.0	58.84058	2
GTAGGTG	40	0.006041334	54.374996	8
TCTTCCG	175	0.0	49.714283	5
GGGCGAC	105	6.856135E-8	48.333336	7
TCCCCCC	75	2.5405881E-5	48.333332	8
TCCGATC	500	0.0	42.05	3
ACCAGCG	70	0.0010538924	41.42857	8
CCCCCCG	90	7.4533295E-5	40.277775	9
TACACAG	90	7.4533295E-5	40.277775	5
TAGAACA	75	0.0014795389	38.666664	4
CTCCCCC	95	1.02489736E-4	38.15789	7
CCTATAA	175	2.401066E-9	37.285713	1
GGCGACC	145	8.6358705E-7	35.0	8
GTACGAC	85	0.0027349151	34.117645	3
TACTCTG	130	1.6458616E-5	33.46154	5
GCGACCC	160	1.8636892E-6	31.718748	9
TACTCCC	160	1.8636892E-6	31.718748	5