H2KH2AFXY_n01_p3f8.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	H2KH2AFXY_n01_p3f8.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	749138
Sequences flagged as poor quality	0
Sequence length	151
%GC	51

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GGTATAGGTCGCGCGCTTAAGCGCCATCCATTTTCGGGGCTAGTTGATTC	1337	0.17847179024425408	No Hit
CCCTAACGTTGCCGTCAACCGCCACGTCCCGGTTCCGGAATTTTAACCGG	1229	0.16405522080043997	No Hit
ACCTATACCCGGCCGTCGGGGCAAGAGCCAGGCCTCGATGAGTAGGAGGG	1155	0.15417720099634513	No Hit
GGTAGGACGTGTCGGCTGCTTTGTTGAGCCGTCACACGGAATCGAGAGCT	926	0.12360873430529487	No Hit
GTATCTGATCGTCTTCGAGCCCCCAACTTTCGTTCTTGATTAATGAAAAC	806	0.10759032381216813	No Hit
GAGTAGGAGGGCGCGGCGGTCGCTGCAAAACCTAGGGCGCGAGCCCGGGC	758	0.10118295961491743	No Hit
GTGTAACAACTCACCTGCCGAATCAACTAGCCCCGAAAATGGATGGCGCT	751	0.1002485523361517	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TTCCGAT	4330	0.0	61.623127	2
CCGATCT	4415	0.0	59.779804	4
CTTCCGA	4545	0.0	59.210377	1
CGATCTG	2190	0.0	56.946644	5
TCCGATC	4780	0.0	56.12516	3
TCTAGGC	90	7.475994E-5	40.282024	3
GATCTGG	1055	0.0	39.862022	6
CGATCTA	985	0.0	35.333675	5
CGATCTT	1405	0.0	33.02839	5
GGCCCTA	265	3.6379788E-12	32.829266	7
GTGCTCT	2350	0.0	32.41001	1
GATCTAG	355	0.0	30.637032	6
TGCTCTT	2555	0.0	30.081448	2
ATCTGAC	485	0.0	29.896069	7
ATCTGCC	535	0.0	29.812246	7
GATCTGA	915	0.0	28.527597	6
TATAAGC	465	0.0	28.067474	3
TAGACGT	345	3.6379788E-12	27.32172	4
CTATAAG	505	0.0	27.280104	2
GGGCCCT	320	4.1836756E-11	27.190367	6