H2KH2AFXY_n01_p2g1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	H2KH2AFXY_n01_p2g1.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	392212
Sequences flagged as poor quality	0
Sequence length	151
%GC	53

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CCCTAACGTTGCCGTCAACCGCCACGTCCCGGTTCCGGAATTTTAACCGG	982	0.25037479730349915	No Hit
GAGTAGGAGGGCGCGGCGGTCGCTGCAAAACCTAGGGCGCGAGCCCGGGC	586	0.14940899309557076	No Hit
GTGCAGATCTTGGTGGTAGTAGCAAATATTCAAATGAGAACTTTGAAGGC	528	0.13462107227723782	No Hit
TCTCCGGACTCCCTAACGTTGCCGTCAACCGCCACGTCCCGGTTCCGGAA	497	0.1267171835639909	No Hit
ATCCTAAGAGTCGGGGGAAACCCGTCTGATAGCGCTTAAGCGCGAACTTC	430	0.10963458537729595	No Hit
GTATCTGATCGTCTTCGAGCCCCCAACTTTCGTTCTTGATTAATGAAAAC	419	0.1068299797048535	No Hit
GTAGGAGGGCGCGGCGGTCGCTGCAAAACCTAGGGCGCGAGCCCGGGCGG	415	0.1058101230966926	No Hit
TTTCCAGGGTGGGCAGGCTGTTAAACAGAAAAGATAACTCTTCCCGAGGC	400	0.10198566081608924	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TTCCGAT	2380	0.0	67.9293	2
CTTCCGA	2450	0.0	66.02213	1
ATCTAAC	55	4.057494E-6	65.90775	7
CCGATCT	2460	0.0	65.1308	4
TCCGATC	2735	0.0	59.112152	3
CGATCTG	1445	0.0	55.189194	5
ATATTAC	55	3.208815E-4	52.75311	1
TACTAGT	45	0.0096355695	48.33236	4
GATCTAA	105	6.893242E-8	48.33236	6
CTAGACA	75	2.5480282E-5	48.332355	4
CGATCTA	450	0.0	46.72128	5
GATCTGG	690	0.0	44.129543	6
CGATCTC	760	0.0	43.88069	5
CGATCTT	600	0.0	43.499123	5
GTGCTCT	1250	0.0	42.94103	1
TCTGACC	140	1.4109901E-8	41.427734	8
TGCTCTT	1315	0.0	41.348972	2
CTATAAT	90	7.452555E-5	40.297512	1
ATCTTAC	130	3.6912934E-7	39.03767	7
TCTAGAC	115	7.1326085E-6	37.825325	3