H2KH2AFXY_n01_p2f7.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	H2KH2AFXY_n01_p2f7.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	254452
Sequences flagged as poor quality	0
Sequence length	151
%GC	52

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GTGTTAAGAAGAGGAATTGAACCTCTGACTGTAAAGTTTTAAGTTTTATG	384	0.15091254932167952	No Hit
GTTTAAGCATATCAATAAGCGGAGGAAAAGAAACTAACAAGGATTCCCTT	370	0.14541052929432663	No Hit
CCCTAACGTTGCCGTCAACCGCCACGTCCCGGTTCCGGAATTTTAACCGG	360	0.14148051498907455	No Hit
CTCGTAGACAGCGCCTCGTGGTGCGACAGGGTCCGGGCACGACGGGGCTC	333	0.13086947636489396	No Hit
GTATCTGATCGTCTTCGAGCCCCCAACTTTCGTTCTTGATTAATGAAAAC	326	0.1281184663512175	No Hit
GGTATAGGTCGCGCGCTTAAGCGCCATCCATTTTCGGGGCTAGTTGATTC	323	0.1269394620596419	No Hit
CCCTTAGTAACGGCGAGCGAACCGGGAAGAGCCCAGCTTGAAAATCGGAC	303	0.11907943344913775	No Hit
GAGTTTAAGCATATCAATAAGCGGAGGAAAAGAAACTAACAAGGATTCCC	293	0.11514941914388568	No Hit
TTCCCAAACAACCCGACTCGTAGACAGCGCCTCGTGGTGCGACAGGGTCC	283	0.11121940483863361	No Hit
ACCTATACCCGGCCGTCGGGGCAAGAGCCAGGCCTCGATGAGTAGGAGGG	278	0.10925439768600757	No Hit
TATTTAGCCTTGGACGGAATTTACCGCCCGATTGGGGCTGCATTCCCAAA	277	0.10886139625548236	No Hit
GTCTACGAGTCGGGTTGTTTGGGAATGCAGCCCCAATCGGGCGGTAAATT	274	0.10768239196390676	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
ATCTAGC	80	9.822543E-11	72.4998	7
TTCCGAT	1685	0.0	60.66749	2
CCGATCT	1720	0.0	59.011467	4
CTTCCGA	1755	0.0	57.857338	1
CGATCTG	715	0.0	56.783062	5
TCCGATC	1870	0.0	54.277927	3
CTTTATA	55	3.2144785E-4	52.72713	2
GATCTCT	140	2.7102942E-10	46.607018	6
CGATCTA	380	0.0	45.78935	5
CTAGGGG	95	1.9152394E-6	45.78935	3
CGATCTC	595	0.0	45.083916	5
TACACCG	70	0.0010551693	41.42846	5
GATCTAG	185	9.640644E-11	39.189087	6
TACACTT	75	0.0014813264	38.66656	5
TCTAGCC	95	1.0267481E-4	38.15779	8
CGATCTT	460	0.0	37.825985	5
TACTGGA	80	0.0020337948	36.2499	7
TGGGGCA	80	0.0020337948	36.2499	5
GATCTGG	385	0.0	35.77912	6
ATCTGGA	145	8.664756E-7	34.999905	2