H2KH2AFXY_n01_p2f2.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	H2KH2AFXY_n01_p2f2.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	106376
Sequences flagged as poor quality	0
Sequence length	151
%GC	49

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GTATCTGATCGTCTTCGAGCCCCCAACTTTCGTTCTTGATTAATGAAAAC	245	0.2303151086711288	No Hit
ACCATACTCCCCCCGGAACCCAAAAACTTTGATTTCTCATAAGGTGCCAG	213	0.20023313529367529	No Hit
CCTATAAGCAACATCCGCTGATCCCTGGTCGGCATCGTTTATGGTTGAGA	181	0.1701511619162217	No Hit
ATGTTATCCCATGCTAATGTATCCAGAGCGTAGGCTTGCTTTGAGCACTC	177	0.16639091524404	No Hit
GGATAACATCATAGGATTTCGATCCTATTGTGTTGGCCTTCGGGATCGGA	172	0.1616906069038129	No Hit
CTCGTAGACAGCGCCTCGTGGTGCGACAGGGTCCGGGCACGACGGGGCTC	171	0.16075054523576748	No Hit
TCATTACTCCGATCCCGAAGGCCAACACAATAGGATCGAAATCCTATGAT	159	0.1494698052192224	No Hit
GTTTAAGCATATCAATAAGCGGAGGAAAAGAAACTAACAAGGATTCCCTT	140	0.13160863352635932	No Hit
CTCATAAGGTGCCAGCGGAGTCCTATAAGCAACATCCGCTGATCCCTGGT	137	0.12878844852222307	No Hit
GTCTACGAGTCGGGTTGTTTGGGAATGCAGCCCCAATCGGGCGGTAAATT	135	0.1269083251861322	No Hit
ATCAGATACCGTCCTAGTCTCAACCATAAACGATGCCGACCAGGGATCAG	122	0.1146875235015417	No Hit
GTTTATGGTTGAGACTAGGACGGTATCTGATCGTCTTCGAGCCCCCAACT	121	0.11374746183349628	No Hit
GAGTTTAAGCATATCAATAAGCGGAGGAAAAGAAACTAACAAGGATTCCC	113	0.10622696848913288	No Hit
CCCTTAGTAACGGCGAGCGAACCGGGAAGAGCCCAGCTTGAAAATCGGAC	110	0.10340678348499661	No Hit
GGTATAGGTCGCGCGCTTAAGCGCCATCCATTTTCGGGGCTAGTTGATTC	110	0.10340678348499661	No Hit
TTCCCAAACAACCCGACTCGTAGACAGCGCCTCGTGGTGCGACAGGGTCC	108	0.10152666014890577	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGATCTG	105	0.0	82.85715	5
CTTCCGA	235	0.0	80.21277	1
CCGATCT	245	0.0	76.938774	4
TTCCGAT	255	0.0	73.92157	2
TGTACAG	45	1.1889772E-4	64.44444	5
CGATCTC	115	2.4483597E-9	50.434784	5
GCCTTAA	45	0.009615648	48.333332	1
GTACAGC	45	0.009615648	48.333332	6
GTGCTCT	120	3.5688572E-9	48.333332	1
TCCGATC	415	0.0	45.421684	3
GGGCGAC	80	3.712046E-5	45.3125	7
TCTTCCG	120	1.9512845E-7	42.291668	5
CCTATAA	120	1.9512845E-7	42.291668	1
GGATATC	90	7.437361E-5	40.27778	1
GGCGACC	95	1.0227072E-4	38.15789	8
CGATCTT	95	1.0227072E-4	38.15789	5
GACAGCG	155	3.4206096E-8	37.419353	7
CTATAAG	140	6.535938E-7	36.25	2
GATCGTC	245	1.8189894E-12	35.510204	7
CTGATCG	250	1.8189894E-12	34.8	5