H2KH2AFXY_n01_p2d3.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	H2KH2AFXY_n01_p2d3.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	138457
Sequences flagged as poor quality	0
Sequence length	151
%GC	48

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GTATCTGATCGTCTTCGAGCCCCCAACTTTCGTTCTTGATTAATGAAAAC	251	0.18128371985526193	No Hit
ACCATACTCCCCCCGGAACCCAAAAACTTTGATTTCTCATAAGGTGCCAG	211	0.15239388402175402	No Hit
ATGTTATCCCATGCTAATGTATCCAGAGCGTAGGCTTGCTTTGAGCACTC	211	0.15239388402175402	No Hit
TCATTACTCCGATCCCGAAGGCCAACACAATAGGATCGAAATCCTATGAT	196	0.1415601955841886	No Hit
GGATAACATCATAGGATTTCGATCCTATTGTGTTGGCCTTCGGGATCGGA	185	0.13361549072997392	No Hit
CCTATAAGCAACATCCGCTGATCCCTGGTCGGCATCGTTTATGGTTGAGA	184	0.13289324483413623	No Hit
ATCAGATACCGTCCTAGTCTCAACCATAAACGATGCCGACCAGGGATCAG	159	0.11483709743819381	No Hit
CTCATAAGGTGCCAGCGGAGTCCTATAAGCAACATCCGCTGATCCCTGGT	158	0.11411485154235611	No Hit
GTTTATGGTTGAGACTAGGACGGTATCTGATCGTCTTCGAGCCCCCAACT	150	0.10833688437565454	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CTGGGGG	30	0.0019322283	72.49982	3
CGATCTA	45	1.1902572E-4	64.44428	5
CGTCTTA	35	0.0035600532	62.142704	145
CCGATCT	245	0.0	59.183525	4
CTTCCGA	250	0.0	55.119774	1
GTATAAG	45	0.009608108	48.350674	1
CGATCTG	150	9.094947E-12	48.333214	5
TCTGCGC	45	0.009621835	48.33321	8
TATATAG	45	0.009621835	48.33321	2
CTGCGCA	45	0.009621835	48.33321	9
GGTATCC	45	0.009621835	48.33321	3
TATAGAG	45	0.009621835	48.33321	2
TTCCGAT	290	0.0	47.499878	2
CTGCGCG	75	0.0014789895	38.666573	9
CCTGGGG	75	0.0014789895	38.666573	3
TACCGTC	195	1.6734703E-10	37.179394	7
TAGTTCA	80	0.0020305966	36.24991	9
TATACTC	80	0.0020305966	36.24991	3
ATACCGT	185	4.127287E-9	35.27018	6
CTATAAG	125	1.25726965E-5	34.799915	2