H2KH2AFXY_n01_p2b5.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	H2KH2AFXY_n01_p2b5.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	2421923
Sequences flagged as poor quality	0
Sequence length	151
%GC	53

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CCCTAACGTTGCCGTCAACCGCCACGTCCCGGTTCCGGAATTTTAACCGG	4835	0.19963475304541062	No Hit
GTATCTGATCGTCTTCGAGCCCCCAACTTTCGTTCTTGATTAATGAAAAC	4792	0.1978593043626903	No Hit
GTGTTAAGAAGAGGAATTGAACCTCTGACTGTAAAGTTTTAAGTTTTATG	4017	0.1658599385694756	No Hit
GGTATAGGTCGCGCGCTTAAGCGCCATCCATTTTCGGGGCTAGTTGATTC	3699	0.15272987621819523	No Hit
GAGTAATGATTAACAGGGACAGTCGGGGGCATTCGTATTTCATAGTCAGA	3323	0.13720502262045492	No Hit
CCTATAAGCAACATCCGCTGATCCCTGGTCGGCATCGTTTATGGTTGAGA	3121	0.12886454276209441	No Hit
GAGTAGGAGGGCGCGGCGGTCGCTGCAAAACCTAGGGCGCGAGCCCGGGC	3116	0.12865809524084787	No Hit
ACCTATACCCGGCCGTCGGGGCAAGAGCCAGGCCTCGATGAGTAGGAGGG	3069	0.12671748854113032	No Hit
GTTTATGGTTGAGACTAGGACGGTATCTGATCGTCTTCGAGCCCCCAACT	3037	0.12539622440515244	No Hit
GGATAACATCATAGGATTTCGATCCTATTGTGTTGGCCTTCGGGATCGGA	2856	0.11792282413602745	No Hit
CTCGTAGACAGCGCCTCGTGGTGCGACAGGGTCCGGGCACGACGGGGCTC	2808	0.11594092793206061	No Hit
GTTTAAGCATATCAATAAGCGGAGGAAAAGAAACTAACAAGGATTCCCTT	2729	0.11267905709636516	No Hit
CTCATAAGGTGCCAGCGGAGTCCTATAAGCAACATCCGCTGATCCCTGGT	2508	0.10355407665726779	No Hit
TCTCCGGACTCCCTAACGTTGCCGTCAACCGCCACGTCCCGGTTCCGGAA	2458	0.10148960144480232	No Hit
ACCATACTCCCCCCGGAACCCAAAAACTTTGATTTCTCATAAGGTGCCAG	2454	0.1013244434278051	No Hit
TTTCCAGGGTGGGCAGGCTGTTAAACAGAAAAGATAACTCTTCCCGAGGC	2434	0.1004986533428189	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
TTCCGAT	17275	57.377865	2
CTTCCGA	17390	57.05779	1
CGATCTG	8090	56.91165	5
CCGATCT	18065	54.94668	4
TCCGATC	20910	47.541004	3
CGATCTA	3430	39.952473	5
CGATCTC	7080	37.99414	5
CGATCTT	3875	33.867477	5
ATCTGTG	925	32.9184	7
GATCTGG	4280	32.865025	6
GATCTAA	1085	32.076538	6
GATCTAG	1390	31.2977	6
GATCTGA	3300	30.320831	6
TATACAG	725	29.002535	5
CTAGGGG	765	28.434446	3
GATCTCG	3675	28.21335	6
ATCTAGC	935	27.913996	7
GTGCTCT	11490	27.58607	1
TGTTAAG	2475	27.538898	2
TCTTCCG	11305	27.450432	5