H2KH2AFXY_n01_p2a12.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	H2KH2AFXY_n01_p2a12.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	722040
Sequences flagged as poor quality	0
Sequence length	151
%GC	53

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GTGTTAAGAAGAGGAATTGAACCTCTGACTGTAAAGTTTTAAGTTTTATG	1530	0.21189961774970914	No Hit
CTTATACACATCTCCGAGCCCACGAGACATCTCAGGATCTCGTATGCCGT	1520	0.21051465292781565	No Hit
GTATCTGATCGTCTTCGAGCCCCCAACTTTCGTTCTTGATTAATGAAAAC	1123	0.15553154949864273	No Hit
CCCTAACGTTGCCGTCAACCGCCACGTCCCGGTTCCGGAATTTTAACCGG	1102	0.15262312337266634	No Hit
GGTATAGGTCGCGCGCTTAAGCGCCATCCATTTTCGGGGCTAGTTGATTC	922	0.12769375657858292	No Hit
GAGTAATGATTAACAGGGACAGTCGGGGGCATTCGTATTTCATAGTCAGA	849	0.11758351337876018	No Hit
ACCTATACCCGGCCGTCGGGGCAAGAGCCAGGCCTCGATGAGTAGGAGGG	768	0.10636529832142264	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CTTCCGA	5315	0.0	53.21616	1
TTCCGAT	5415	0.0	52.22255	2
CCGATCT	5650	0.0	50.043533	4
CGATCTG	2720	0.0	46.64455	5
CTAAGAC	95	1.9194104E-6	45.791992	3
TCCGATC	6550	0.0	43.17031	3
CGATCTA	1170	0.0	37.178955	5
CGATCTC	2185	0.0	34.839317	5
GATCTAA	320	0.0	33.983887	6
GTGTTAA	995	0.0	33.528717	1
CCTATAG	90	0.0036216755	32.23292	1
ATACCTA	115	3.161501E-4	31.521286	5
CGATCTT	1180	0.0	30.719896	5
GATCTGG	1450	0.0	30.499563	6
ATCTGAG	345	0.0	29.41987	7
TGTTAAG	1090	0.0	29.26969	2
TCTAACG	235	4.288995E-8	27.769407	2
GTTAAGA	1155	0.0	27.620565	3
TCCTACA	290	3.947207E-10	27.503416	2
TGCTCTT	3485	0.0	26.839775	2