SE377_GCCAAT_L002_R2_001.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SE377_GCCAAT_L002_R2_001.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	9668553
Sequences flagged as poor quality	0
Sequence length	51
%GC	39

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GATCGGAAGAGCGTCGTGTAGGGAAAGAGTGTAGATCTCGGTGGTCGCCGT	68870	0.7123092773034393	Illumina Single End PCR Primer 1 (100% over 51bp)

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
GGTCGCC	8905	41.13607	43
GTAGGGA	9595	41.013298	18
GAGCGTC	9655	40.735123	9
TGGTCGC	9150	40.182163	42
CGTGTAG	9490	40.115665	15
GCGTCGT	9605	39.93989	11
GTGGTCG	9560	39.659237	41
AGAGCGT	10070	39.525578	8
AGCGTCG	10020	39.34108	10
GTGTAGG	9975	38.819313	16
TAGGGAA	10110	38.81282	19
GTCGCCG	9450	38.811295	44
GATCTCG	10240	38.715588	34
CTCGGTG	10175	38.631214	37
AAGAGCG	10560	38.5438	7
CGTCGTG	10015	38.259876	12
TGTAGGG	10120	38.218643	17
ATCTCGG	10445	38.106518	35
TCGCCGT	8910	37.60273	45
CGGTGGT	10285	37.518	39