FastQCFastQC Report
Fri 3 Apr 2015
H2K5YBCXX l02n02 9-9610.34200000001ba0.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameH2K5YBCXX l02n02 9-9610.34200000001ba0.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences11329192
Sequences flagged as poor quality0
Sequence length101
%GC30

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CCGATCT4850.017.63024532-33
TCCGATC6950.013.32838232-33
GACCGGA5053.0464018E-49.4064279
GACGGGA6001.7647799E-48.7087849
GTGTGAC20800.07.30568365
GTGACTG15101.08975655E-86.91853577
GACAGGA24009.640644E-115.9378079
AGTCTCG10900.00250352875.66543059
CAAGTGT43100.05.3987482
TGACAGG17801.0173531E-55.3366958
GTCTCGC9455.1481893E-65.278074710-11
CGATCTA11854.769845E-75.01086334-35
Produced by FastQC (version 0.11.2)