FastQCFastQC Report
Fri 3 Apr 2015
H2K5YBCXX l02n01 9-9610.34100000001ba3.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameH2K5YBCXX l02n01 9-9610.34100000001ba3.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences11329192
Sequences flagged as poor quality0
Sequence length101
%GC30

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TGCCGTC10000.019.9460545
GCCGTCT10250.019.4595686
TATGCCG13050.015.2843343
ATGCCGT13400.015.2395244
CGTATGC19550.010.6976781
GTATGCC26600.08.3913452
CCGTCTT28600.07.3062477
Produced by FastQC (version 0.11.2)