FastQCFastQC Report
Fri 3 Apr 2015
H2K5YBCXX l02n01 5-59290.34100000001b2c.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameH2K5YBCXX l02n01 5-59290.34100000001b2c.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences12122790
Sequences flagged as poor quality0
Sequence length101
%GC33

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GCCGTCT12100.016.8770666
TGCCGTC12900.015.4622765
TATGCCG13650.014.264723
ATGCCGT14700.014.2150174
CGTATGC17550.012.188311
GTATGCC26400.07.37566142
CCGTCTT31600.06.61270957
Produced by FastQC (version 0.11.2)