FastQCFastQC Report
Fri 3 Apr 2015
H2K5YBCXX l02n01 4-59175_2015-03-25 191213422911.341000000044a1.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameH2K5YBCXX l02n01 4-59175_2015-03-25 191213422911.341000000044a1.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences15188209
Sequences flagged as poor quality0
Sequence length101
%GC30

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GCCGTCT12200.021.7994926
TGCCGTC14150.017.788435
ATGCCGT17150.015.7844294
TATGCCG17800.014.9412233
CGTATGC21650.011.6373031
GTATGCC32650.08.5821952
CCGTCTT39750.07.8854227
Produced by FastQC (version 0.11.2)