FastQCFastQC Report
Fri 3 Apr 2015
H2K5YBCXX l02n01 1-58812_2015-03-25 191131308797.34100000004437.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameH2K5YBCXX l02n01 1-58812_2015-03-25 191131308797.34100000004437.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences11904405
Sequences flagged as poor quality0
Sequence length101
%GC39

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TATGCCG9000.013.1921233
GCCGTCT11000.012.5205246
ATGCCGT11600.010.2352694
TGCCGTC12600.010.1767825
CGTATGC15250.09.0401591
GTATGCC23509.094947E-126.2649872
CGTCTTC26453.45608E-115.745858
CCGTCTT25351.3400495E-85.24562557
Produced by FastQC (version 0.11.2)