FastQCFastQC Report
Fri 3 Apr 2015
H2K5YBCXX l01n01 61495-bar5.3410000000441d.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameH2K5YBCXX l01n01 61495-bar5.3410000000441d.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences15526190
Sequences flagged as poor quality0
Sequence length101
%GC40

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GATCGGA36750.09.95285994-95
AGATCGG43750.09.33759194-95
ATCGGAA38200.08.58025594-95
TAGATCG18850.08.06404894-95
TCGGAAG37900.07.018806594-95
CGGAAGA40900.05.92326794-95
AAGATCG31900.05.36075994-95
ACACGTC21800.05.120658494-95
Produced by FastQC (version 0.11.2)