H2K2WBGXG_n01_0722_CD4_low_d1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	H2K2WBGXG_n01_0722_CD4_low_d1.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	7420477
Sequences flagged as poor quality	0
Sequence length	151
%GC	48

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
ATCGATTCCTTGGTTCTTGTGGAAAGGACGAAACACCGCCAGTAGGTCCA	6812685	91.80925970122945	No Hit
ATCGATTCCTTGGTTCTTGTGGAAAGGACGAAACAGCGCCAGTAGGTCCA	136698	1.8421726797347395	No Hit
ATCGATTCCTTGGTTCTTGTGGAAAGGACGAAACACCTCCAGTAGGTCCA	19872	0.2677994959084167	No Hit
ATCGATTCCTTGGTTCTTGTGGAAAGGAAGAAAAACCGCCAGTAGGTCCA	14616	0.19696846981669774	No Hit
ATCGATTCCTTGGTTCTTGTGGAAAGGACGAAACACCACCAGTAGGTCCA	13920	0.1875890188730455	No Hit
ATCGATTCCTTGGTTCTTGTGGAAAGGACGAAACACCGCCAGTAGGTCAC	10800	0.14554320429805254	No Hit
ATCGATTCCTTGGTTCTTGTGGAAAGGAAGAAACACCGCCAGTAGGTCCA	9596	0.12931783226334373	No Hit
ATCGATTCCTTGGTTCTTGTGGAAAGGACGAAACACCGCAGTAGGTCCAC	9335	0.12580053815947412	No Hit
ATCGATTCCTTGGTTCTTGTGGAAAGGACGAAACACCCCCAGTAGGTCCA	8639	0.11642108721582184	No Hit
ATCGATTCCTTGGTTCTTGTGGAAAGGACAAAACACCGCCAGTAGGTCCA	7929	0.10685296915548691	No Hit
ATCGATTCCTTGGTTCTTGTGGAAAAGACGAAACACCGCCAGTAGGTCCA	7731	0.10418467707668927	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
CGATTCC	737900	144.90141	3
TCGATTC	738295	144.9005	2
ATCGATT	738225	144.8583	1
ATTCCTT	739055	144.8368	5
CCTTGGT	737565	144.78636	8
TCCTTGG	737665	144.77359	7
TTCCTTG	738865	144.75923	6
CTTGGTT	740160	144.16815	9
GATTCCT	750440	142.5612	4
GTCTGAA	715495	129.50494	145
CTCGTAT	9280	122.10755	145
GACTGAA	3165	107.20219	145
TCTGAAC	76935	90.26674	145
CTATTCC	1420	79.14894	3
CCTTGTT	1205	76.418915	8
GTCGAAC	2245	76.21267	145
GACAGAA	915	72.102745	145
GCTGAAC	1640	72.056854	145
GTGTATG	4695	71.4952	145
CCTTAGT	1130	66.0911	8