FastQCFastQC Report
Wed 28 Aug 2019
H2HY7BGXC_n02_Lu_RNAseq_Aug2019_Sample_20.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameH2HY7BGXC_n02_Lu_RNAseq_Aug2019_Sample_20.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences366
Sequences flagged as poor quality0
Sequence length25
%GC15

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TTTTTTTTTTTTTTTTTTTTTTTTT9927.049180327868854No Hit
TTTTTTTTTTTTTTTTTTTTTTTTA123.278688524590164No Hit
TTTTTTTTTTTTTTTTTTTTTTTAA71.912568306010929No Hit
TTTTTTTTTTTTTTTTTTTTTTTGT61.639344262295082No Hit
TTTTTTTTTTTTTTTTTTTTTTTTC51.366120218579235No Hit
TTTTTTTTTTTTTTTTTTTTTTTTG51.366120218579235No Hit
TTTTTTTTTTTTTTTTTTTTTTGTT41.092896174863388No Hit
TTTTTTTTTTTTTTTTTTTTTTTAT30.819672131147541No Hit
TTTGGTGTGTTTGGTTTTGTTTTTT20.546448087431694No Hit
TTTTTGTTTTTTTTTTTTTTTTTTT20.546448087431694No Hit
TTTTTTGTTTTTTTTTTTTTTTTTT20.546448087431694No Hit
TTTTTTTTTTTTTTTGTTTTTTTTT20.546448087431694No Hit
TTTTTTTTTTTTTTTTTTGTTTGTT20.546448087431694No Hit
TTTTTTTTTTTTTTTTTTTTTTTAC20.546448087431694No Hit
TTTGTTTTGTTGGTTGGGTTTGGGG10.273224043715847No Hit
TTTTTTTTTTGTTTTTTTTTTTGTT10.273224043715847No Hit
TTTGTTGTTGTCTTTTTTGTTGGGT10.273224043715847No Hit
TTTTTTTTTTGGGTTCTTCGTTTTT10.273224043715847No Hit
TTTTTTTTTGTTTTTTTTTTTTTTG10.273224043715847No Hit
TTTTTTGTTTTTGGGGTTTTGGGGG10.273224043715847No Hit
TTTTTTTTTTGTGTGTGGTGTGTGT10.273224043715847No Hit
TATTTTGTGTGTTGTTTTTTTTTTG10.273224043715847No Hit
TTTTTGGTGGTTGTTTGTTGTTGGG10.273224043715847No Hit
TTGCTTTTTTGTGGTTGGTGTGGGG10.273224043715847No Hit
GTGGGGTGTTGTGTGTGTTTTTTTT10.273224043715847No Hit
TTCTTTTTTTTTTTTTTTTTTTTTT10.273224043715847No Hit
TTTTATTAAATTTTTTTTTTTTTTT10.273224043715847No Hit
TTGTGTGTTGGTTTTTTTGGTTTGT10.273224043715847No Hit
TTTTTATTTTTTTTTTTTTTTTTTT10.273224043715847No Hit
ATATTTTTTTTTTTTTTTTTTTCAA10.273224043715847No Hit
CGTTGGGGGGTGGGGGGGGGTTGGG10.273224043715847No Hit
TTTGTGGTGTGGGTTGGTTGTTGGG10.273224043715847No Hit
TTTTGTGTTTGGGTTTTGTTGTTGT10.273224043715847No Hit
GCGTGGGGGGGGTGTTTTTTGTTTG10.273224043715847No Hit
TTTTTGTTTTTTTTTGTCTTTTGTT10.273224043715847No Hit
TTTTTTTTGGTGTTTGTTGTGGGTG10.273224043715847No Hit
TTTTGGGTGGGGTGGGGGGGTGTGT10.273224043715847No Hit
TTTTTGTTTTTTTTTGTGTTTTGTT10.273224043715847No Hit
TTTATAAAATAAATAAATTAACTAA10.273224043715847No Hit
TTTTGTTTCTTTTGGTTTTTTTTGT10.273224043715847No Hit
TCTTGTTGGTTGTGGGTGTGTTTGG10.273224043715847No Hit
TTTTTTTTTTTTTGTTTTTGTTTTT10.273224043715847No Hit
TTTTAAATAAAAAAATTAATAATTT10.273224043715847No Hit
TTTTTTTTTGTTGTTTTTTTTTGGT10.273224043715847No Hit
TTTGTTTTGTTTTTTTTTTGTTTGT10.273224043715847No Hit
TTTTTTTTTTTTTTTTTTTTTCCCC10.273224043715847No Hit
TTTTTTTTTTTTTTTTTTTTTTTCA10.273224043715847No Hit
TTTTTTTTTTTTTTTTTTTTTTTCC10.273224043715847No Hit
TTTTTTTTTTTGGGTGGTTTTGTTT10.273224043715847No Hit
TTTTGTTTTTTTTTTTTTTTTTTTT10.273224043715847No Hit
TTTGGTTTTGTTTTTGTTTTTTTTT10.273224043715847No Hit
TTTTGTTTTTTTTGTTTTTTTTTTT10.273224043715847No Hit
TTTCTTCTTGCCTCTCTCTGCTTTC10.273224043715847No Hit
TGTGTGTGGGGGGGGGGGTGGTTTG10.273224043715847No Hit
TATTTTATTATTAATAATTAATTTT10.273224043715847No Hit
TTTAATATTTTTTTTTTTTTATTTT10.273224043715847No Hit
TTTTTTTTTTTGTTTTTTTTTTGTT10.273224043715847No Hit
TTTGTTTTTGTTTGTTTTTTTGTTT10.273224043715847No Hit
TTTGTTTGTTTTTTTTTTTTTTGGG10.273224043715847No Hit
TTTGTGTTGGGGTGTTGTTGGGGGG10.273224043715847No Hit
TTTTTTTTTTTTCTTTTTTTTTTTT10.273224043715847No Hit
TGTGTGTTGTTGGTGTGGGTTTTTG10.273224043715847No Hit
GTGTTGTTTTTTGTTGGTGGTTTGT10.273224043715847No Hit
TTATTTTTTTTTATTTTTTTTTTAA10.273224043715847No Hit
TTTTTTTTTTTTTATTTTTTTTTTT10.273224043715847No Hit
TTTTTTTTGTCGTTTTGGGTTTTTG10.273224043715847No Hit
TTTTTGTGTTTGTGTTGGTTGTGGG10.273224043715847No Hit
TTAATATTATTTTAAATTTATTAAA10.273224043715847No Hit
TGTTTTGTTTGGTTTTTGTTTTGTT10.273224043715847No Hit
CTGGGTGGGGGTTGGGGGGGGGGGG10.273224043715847No Hit
ATTAATATAATTTTTTTTTTTTTTT10.273224043715847No Hit
TTTTTTTTTTTTTTTTTTTTGGGTT10.273224043715847No Hit
TTGTTTGGTTTTGGGGGTGTGTTGG10.273224043715847No Hit
TGTTTGTTGTGTTTGTTTTTTTGTT10.273224043715847No Hit
TTTCTTTGTTTTTTTTTTTTTTTGT10.273224043715847No Hit
TTTTTTTTTTTGTGTGTTGTTTGGG10.273224043715847No Hit
TTTTTTTGTTTTTGTTGGGTTTGGG10.273224043715847No Hit
GGGGTGTCGGGGGTGTGGGTTTTTG10.273224043715847No Hit
TTGTTGTTGTTGTGGTTGTTTTTTT10.273224043715847No Hit
TTTTTTTTTTTTTTTTTTTGTTTGG10.273224043715847No Hit
TTTTTTTTTTTTTTTTTTTTTTATC10.273224043715847No Hit
TTTTATTTATTTTTTGTTTTTGTTG10.273224043715847No Hit
TATGTCGCTCAGCTCGTATCTCCAT10.273224043715847No Hit
TTTGTTGTTGTTTTTTTTTTTTTTG10.273224043715847No Hit
TGTGTTGTGGTTGGTTGTGTTGGTT10.273224043715847No Hit
GTCTTGGGTTTGTTGTGTTTTTGGG10.273224043715847No Hit
TTTTTTTTTCTTTTTTTTTTCGTTT10.273224043715847No Hit
TTTTTTTTTTTTTTTTTTTTCGTTT10.273224043715847No Hit
TTTTTTTGGTTGGTGGGTTTTTTGG10.273224043715847No Hit
TTCGGGGGTTGGTTTTGTTTTTTTT10.273224043715847No Hit
TTCTTGTGTTTGGGTGGGGGTGTGG10.273224043715847No Hit
TTTTTCTTTTTTTTTTTTTTTTTTT10.273224043715847No Hit
TGACTTATTTTAGTAAATATTATAA10.273224043715847No Hit
TTTTCTTTTTGTTTTTTTTTTGTTT10.273224043715847No Hit
TGGGGGGGGGGTTGTGCTTTTGTTG10.273224043715847No Hit
TTTGTGTTTTTTTTTTGTTTTTTTG10.273224043715847No Hit
TTTTTTTTTTTTTTTTTCCCCAACA10.273224043715847No Hit
GGGGGGGGGGGGGGGGGGGGGGTTT10.273224043715847No Hit
TTTTCTTTTTTTTTTTTATTTTTTT10.273224043715847No Hit
TTTTTGTTTGTGTTTGTTGTTTTGT10.273224043715847No Hit
TGTTTGGGGGTGGGGGGGGTTGGGG10.273224043715847No Hit
TATGTTTTTTTTTTGTGTTTTTTTT10.273224043715847No Hit
TTTTTTTTTTTTTTTTTTTTTTACA10.273224043715847No Hit
TTTTTTTGGTTTTGTGTGTTGTTGG10.273224043715847No Hit
TTTGTTGTTTTTGTTTGTTTTTGTT10.273224043715847No Hit
TTTGTTTTTTTTGGGGGTTGTGGGG10.273224043715847No Hit
TTTTTTTTTTTTTGTTTGTTTTTTT10.273224043715847No Hit
TTTTTTTTGTTTTTTGTTTTTTAGT10.273224043715847No Hit
TTTTTTTTTTTTTTTTTTTTTTTGA10.273224043715847No Hit
TTTTTTTTTTTTTTTTTTTTTTTGC10.273224043715847No Hit
TTTTTGTTTTTGGGTGTTTTTTGTT10.273224043715847No Hit
TTTTTTTTTTTTTTTTTTTTTTTGG10.273224043715847No Hit
TTGGTGTTTTGTGTTTTTTGTGGGT10.273224043715847No Hit
GTTTTTGTTTTTTTTGTTTTTTTGT10.273224043715847No Hit
TTTTGTTTTTTTTTGTTTTTTGTTT10.273224043715847No Hit
TTTGTTTTTTTTTTTTTTTTTTGTT10.273224043715847No Hit
TTTTTTTTTTTTTTTTTTGGTTTGT10.273224043715847No Hit
TTTTTTTTTTTTGTTTTGTTTGTTT10.273224043715847No Hit
TTGTTTTTGTGTTTTTTTGTTTGTG10.273224043715847No Hit
TTTTTGGTGTGTGTTTTTGTTTTTT10.273224043715847No Hit
TTTTTTTTTTTTTTTGTGTTTTTGT10.273224043715847No Hit
TTTGTTTGTTTTGTTGGTGTGTTGG10.273224043715847No Hit
TTTTTTTTTTTTTTTTTTTTTGGTT10.273224043715847No Hit
TTATATATTTTTTTATTTTTTTTTT10.273224043715847No Hit
TTTTTGGGTTGTTGTTGTTTTTGGG10.273224043715847No Hit
TTTGTTTTGGTTTGTTTTTTTTTGT10.273224043715847No Hit
TTTATTTTTTTTTTTTTTTTTTTTT10.273224043715847No Hit
TTTTTTTTTTTTTTTATTATTTTTC10.273224043715847No Hit
TTTTTTTTGTGCTTTTGGGTTTTTG10.273224043715847No Hit
GTCGGGGGGGGGGGGGGGGGTTGGG10.273224043715847No Hit
TTTTTATTTATTTTTTTTTTGTTTT10.273224043715847No Hit
GTTGGGGGGGGGGTTTTGTGTTGGT10.273224043715847No Hit
TTTTTGTTTTTTTTTTGTGTTGGGT10.273224043715847No Hit
TTTTTTTTGTTTTTTTTTTGTTTGG10.273224043715847No Hit
TTGTTGTTGGTTGTGGGGTTTTGTT10.273224043715847No Hit
TTTTTTTTTTTTTTTTTTTTTTAGT10.273224043715847No Hit
TGTTGTTTTTTTTGTTGTGTTTTTT10.273224043715847No Hit
CCGTGGGGGGGGGGGGGGGTGTTTG10.273224043715847No Hit
TAGTTTTTTTTTTGTTTGTTTTTTT10.273224043715847No Hit
TTTTTTTTTTTTTTTTTTTTTACTT10.273224043715847No Hit
TTTGTTTTTTTTTTGGGGTTGGGGG10.273224043715847No Hit
TTTGTTTTTTTTTTGGTGTTGTGTT10.273224043715847No Hit
TGTTTTTGGTTTGGGTTGGTGTTTT10.273224043715847No Hit
TTTTGTGTTTTTTGTTTTTTTTGGT10.273224043715847No Hit
TTTTTTTTTTTTTGTTTGTTTTGGG10.273224043715847No Hit
TTTGGTTGTGTTTTTTGTGTTTTGT10.273224043715847No Hit
TTTTTTGTTTTTTTGGTTTTTTGTT10.273224043715847No Hit
TTTTGTTTTTTGTTTTGGGGTGGGG10.273224043715847No Hit
GGCGGTGTTGTTGTTGGTTTTTGGT10.273224043715847No Hit
TTGTTGTTGGTTGTTGTGTTTTGTG10.273224043715847No Hit
TGTGGTTTGTTTTTTTTTTGTTTGG10.273224043715847No Hit
TTTTTTTTTTTTTTTTGTTTTTTGT10.273224043715847No Hit
TTTGTGGGGGGGGGGGGGGGGGGGG10.273224043715847No Hit
TTTTTTGTTTGTTGTTTGTTTTTGG10.273224043715847No Hit
TTTTTTTTTGTGTGTGTTGTTGTTT10.273224043715847No Hit
CGCTCCGTCTTCCTGTGGCTGTGGT10.273224043715847No Hit
TTTTGTGTTTTTTTTTTGTGTTTGT10.273224043715847No Hit
TGGGTGGTGGTTTTGTGTGTTTGGT10.273224043715847No Hit
ATTAAAAATAAAAAAAAAAAAATTT10.273224043715847No Hit
TTTTTTTTTTTTTTGGTTTTTTTGG10.273224043715847No Hit
GGTTGTGGGGGTGTGGTGTGTTTGG10.273224043715847No Hit
TTTTTTGTTTTTTTTTTTGTTTGTT10.273224043715847No Hit
TTTTTTTTTTTTTTATTTTTTTTTT10.273224043715847No Hit
TTTTTTTTTTTTTTTGGTTTTGTGG10.273224043715847No Hit
TTTTTTTTTTTTTTAAAAAATAACC10.273224043715847No Hit
GGGGGGGGGGGGGGGGGGGTGGGGG10.273224043715847No Hit
TTGTGTGTGTGTTTTTGGTTGTTTT10.273224043715847No Hit
TTTTTTTTTTTATTTTTTTTTTTTT10.273224043715847No Hit
TTTTTTTTTTTTTTTTTATTTTTTT10.273224043715847No Hit
CTCCGGGGGGGGGGGGGGGGGGGGG10.273224043715847No Hit
TTTTGTTTTTTTTTTTTTTTTGTTC10.273224043715847No Hit
TTTTTTTATTATTTTTTTTTTTTTT10.273224043715847No Hit
TTTTGTGTGTGTGTGGTTGTTGTGT10.273224043715847No Hit
TTTTTTTTTTTTTTTTTTTTTGGGT10.273224043715847No Hit
TTTTTTTTTTTTTGTTTTGTTTTAC10.273224043715847No Hit
TTTTTTTTATTTTTTTTTTTTTTTT10.273224043715847No Hit
TTTTTTTTGTTTTTTTTTTTTTTTT10.273224043715847No Hit
TTTTTTTATTTTATTTTTTTTTTCC10.273224043715847No Hit
TTGTTGTGTTTTGGTTGGTGTGTTT10.273224043715847No Hit
ATTTTTTTTTTTTTTTTTTTTTTTT10.273224043715847No Hit
TTTTTTTGTTGTGGGGTGTGGTGTT10.273224043715847No Hit
TTTTTGTTTTTTTTTTTTTTTTGTG10.273224043715847No Hit
TTTTGGGTGGTTCTGTTGTGTGTTT10.273224043715847No Hit
TGTTTGTTTTTTTTTGTGTTTTGTT10.273224043715847No Hit
TTTTTTTTTGTTTTTTTTTTTGGTT10.273224043715847No Hit
TTGTTCTGTTTTGGTTGGTGTGTTT10.273224043715847No Hit
AATAATTTTAAATATTTTTAATTTT10.273224043715847No Hit
TGTGGTGTTGTTGTTTGGTTTTGTT10.273224043715847No Hit
TTTTTGTTTTTTTTTTTTTTTTGTT10.273224043715847No Hit
TTTTTTTTTTTATTTTTTTTTTTTA10.273224043715847No Hit
GTTGTGTGTTGGGTTTGTTTTTGGG10.273224043715847No Hit
TCAGTCTGCACCTTCGCCTAATAAT10.273224043715847No Hit
ATTTAGTTATTTTTATTATTATTTA10.273224043715847No Hit
TTTTGTGTGTTGTTGTGTGTTGTTT10.273224043715847No Hit
TTTTTTTTTTTTTTTTTTTTCCAAA10.273224043715847No Hit
TTGTTTTTTTTTTTTTTTTTTTTGT10.273224043715847No Hit
TTTTTTTGTTTGGTGTTTTTTTTGT10.273224043715847No Hit
TTTTTGTGTGTGTCTGGTCGTTTTG10.273224043715847No Hit
TTTTTTTTTTTTTTTTTTTTTAATA10.273224043715847No Hit
TTTGGTGTGTTGGGTGTTTTTTGGG10.273224043715847No Hit
TTGTTGTTGTGGTTTGGGTTTTTGT10.273224043715847No Hit
TTGGTGTTGGTGTGTTTGTTTTAGT10.273224043715847No Hit
TTTTTTTTTTTTTTTTTTAAATAAA10.273224043715847No Hit
TTTGTGTTGTGTTGTTTTTTGGGTT10.273224043715847No Hit
TCTTTTTTTTTTTTTTTTTTTTTTT10.273224043715847No Hit
TTGTGTTGTGTTTGGTTTTTTTTGT10.273224043715847No Hit
TGTTTTTTTTTTTTTTTGTTTTTGT10.273224043715847No Hit
TTTGGTGTTTGTTTTTTTTTTGTTT10.273224043715847No Hit
TTGTTCTGTGGGTTGTGTTTTTTGT10.273224043715847No Hit
GGGTTTTGGGGGGGGGGGGGGTTTG10.273224043715847No Hit
TTTTTTTTTTTTTTTTTATTTTTAA10.273224043715847No Hit
TTCGTGGGGTGCGGCTGGGGGTGGT10.273224043715847No Hit
TTGTTGTGTGGGTTGTGTTTTTTGT10.273224043715847No Hit
TTTTTGTTTTTTTTTTGTTTTTTTT10.273224043715847No Hit
TTTATTTTATATTTTTTTTTTTTAT10.273224043715847No Hit
TTTTTTTTGTTTTTTTGTTTTTTGG10.273224043715847No Hit
TTTTGTTTGTTTTGGTTTTTTTTGT10.273224043715847No Hit
TGTGGTGGTGTGGGTTGGGGTTTTG10.273224043715847No Hit
TTTTTTTTTTTTTTTATTTTTTTTT10.273224043715847No Hit
TGTGTTTTTTTTTGGGGTTTTTGGG10.273224043715847No Hit
TTTTTTTTTTTTTTTTGGTTTTGGG10.273224043715847No Hit
TGGGTTTTTTTTTTTTTTTTTTTGT10.273224043715847No Hit
TTTTTATTTTTTATATTTTTTTTCT10.273224043715847No Hit
TTTGTTGTTTTGGTTTGTTGTTTTG10.273224043715847No Hit
CCGGGGGGGGGGGGGGGGGGGGGGG10.273224043715847No Hit
TTATATATAAAATAATTATTTTTTA10.273224043715847No Hit
TTGGGGGGGGGGGGGGGGGGGGTGG10.273224043715847No Hit

[OK]Adapter Content

Adapter graph

[OK]Kmer Content

No overrepresented Kmers