FastQCFastQC Report
Wed 28 Aug 2019
H2HY7BGXC_n02_Lu_RNAseq_Aug2019_Sample_1.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameH2HY7BGXC_n02_Lu_RNAseq_Aug2019_Sample_1.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences251
Sequences flagged as poor quality0
Sequence length25
%GC23

[WARN]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TTTTTTTTTTTTTTTTTTTTTTTTT3313.147410358565736No Hit
TTTTTTTTTTTTTTTTTTTTTTTTA51.9920318725099602No Hit
TTTTTTTTTTTTTTTTTTTTTTTTG41.593625498007968No Hit
TTTTTTTTTTTTTTTTTTTTTTTTC31.1952191235059761No Hit
CGGGGGGGGGGGGGGGGGGGGGGGG20.796812749003984No Hit
TTTTTTTTTTTTTTTTTTTTTTTCT20.796812749003984No Hit
TTTTTTTTTTTTTTTTTTTTTTTAT20.796812749003984No Hit
TTTTTTTTTTTTTTTGTTTTTTTGT20.796812749003984No Hit
TTTTTTTTTTTTTTTTTTTTTTTGT20.796812749003984No Hit
TTTTTGTTTTTTTTTTTTTTTTTGT20.796812749003984No Hit
TTTTTTTTTTTTTTTGGTTTTTGGG20.796812749003984No Hit
TTTTTTTTTTTTTTTTTTTTTTTAA20.796812749003984No Hit
TTTTTTTTTTTTTTTTTTTTTTGTT20.796812749003984No Hit
TTTTTCTTTTTTTAATAAAAATAAA10.398406374501992No Hit
TAAAATAAAACCCCCCTACCGAGTC10.398406374501992No Hit
TTTTGTTGTTTTTTTTTTTTGGGGG10.398406374501992No Hit
TTTTTTTTTTTCTTTTTTTTTTTTC10.398406374501992No Hit
TGGGGGTGGTGGTGGTGGTGTTGGG10.398406374501992No Hit
TTTTTTTTTTTCTTTTTTTTTTTTA10.398406374501992No Hit
TTCTTTTTTTTTTTTTTTTTTTTTT10.398406374501992No Hit
TTGTGTGTGGGTGGTGGTGTTTTTG10.398406374501992No Hit
TTGTTTTTTTTTTTTTTTTTTTTTG10.398406374501992No Hit
TTTTATCTATAAATTATTTTTATAT10.398406374501992No Hit
TGTTTGTGTTTGTTTTTTCTTTTTT10.398406374501992No Hit
TTTTCTTCTTTTTTTTTTTTTTTTA10.398406374501992No Hit
TTTTTTTTTTTTTTTTTTTTAAATT10.398406374501992No Hit
TTTTTTTTTTTTTTTTTTTTTAGTT10.398406374501992No Hit
GGGGGGGGGGGGTGTGTTGGGGGGG10.398406374501992No Hit
TGGTGGTGGTGTCGGGTGTTGGTGG10.398406374501992No Hit
TTTATTAATTTAATTTAATTTATTA10.398406374501992No Hit
TTTTTTTTTTTTTTTTTTTTATTAA10.398406374501992No Hit
TTTTTTTTTTTTTTTTTTTTTCAAT10.398406374501992No Hit
TTTTTTTGTGTGTGTGTTGTTTTTG10.398406374501992No Hit
TGTTTTTTTTTTTGTTGTTTTTTGT10.398406374501992No Hit
TAGTGGGTTGGGTTTTTTTGATTGG10.398406374501992No Hit
AAAAAAAAAAATAATAAAAAAATTA10.398406374501992No Hit
TTTTTCTTTTTTTTTTTTTTTTGAT10.398406374501992No Hit
TTTTTTTTGTGTTTTGTTTTTGTTT10.398406374501992No Hit
TTTTTTATTTTTTTTTTTTTTTTTG10.398406374501992No Hit
TTTTTTTTTTTCTTTTTTTTTTCTT10.398406374501992No Hit
TTTTTTTTTTTTTTTGTTTTTTGTT10.398406374501992No Hit
TTTTTTTTTTTTTTTTTTTTTTTCA10.398406374501992No Hit
TTTTGTGTTTTTTTTTTTTTTTATT10.398406374501992No Hit
TTTTTTTTTTTTTTTTTTTTTTTCC10.398406374501992No Hit
TTTTTTTTTTTTTTTTTTTCCTTTT10.398406374501992No Hit
TCACCTAAAACACCCAACCCCCTCC10.398406374501992No Hit
TTTTTTTTGTGTGTGTGTTTTTTTC10.398406374501992No Hit
ATAAATAATATATAAATATTATACC10.398406374501992No Hit
GTTTTTTTGTTTTTTTTTTTTTTTG10.398406374501992No Hit
TTGTGGTTTTTTGTTGTTTTTGTGG10.398406374501992No Hit
TTTTTTTTTTTCTTTTTTTTTTTTT10.398406374501992No Hit
TTTCCCGTGGGGGGGGGGGGGGGTG10.398406374501992No Hit
TGCCGGGGCGTGTGCGCGGTTTTTG10.398406374501992No Hit
GGGGGGGGTCCCCCCCGGTGTCTTT10.398406374501992No Hit
GTGGGGGGTGGTGTTTGGGGTGGGG10.398406374501992No Hit
TTTGTTTTATTTGGTTTTTTTTTGT10.398406374501992No Hit
TTTTTTTATTTTTTTTTTTTTTTTG10.398406374501992No Hit
TTTTTTTTTTTGTTTTTTTTTTGTG10.398406374501992No Hit
TCCCCACAACCCCCCCCCCCCCTCA10.398406374501992No Hit
TGGTTGTTGTGTGGGTTGGTTTTGG10.398406374501992No Hit
ATTAAAAGTATATTTATAATTTATT10.398406374501992No Hit
TTTTTTTTTTTTTTTTTTTTTTACC10.398406374501992No Hit
AATAAATTATCTTTATACTTTCAAC10.398406374501992No Hit
TTTTTTTCTTTTTTTTTTTTTTTTA10.398406374501992No Hit
TCCCCTCCCCCCCACCCCCCCCGTC10.398406374501992No Hit
TTTGTTTTTTTTTGTTTTTGTTGGG10.398406374501992No Hit
TTTGTTGTTTTGTTTTTTTGTTGGT10.398406374501992No Hit
TTGGTTTTTTGTTTTGTGTTTTGGG10.398406374501992No Hit
TTTTTTGTTTTGTTTTTTTTTTTGT10.398406374501992No Hit
TTTGTTTTGTTTTTTTTGTGTTTTT10.398406374501992No Hit
TTTCTGGGTTGTCGGTCTTCCCAGG10.398406374501992No Hit
GTGTTGTGGTGCTGTGTTTGTGTGT10.398406374501992No Hit
TTTCTTTTTTTTTTTTTTTTTTCTA10.398406374501992No Hit
TTTTTTATTATATTTTTGATCGGTT10.398406374501992No Hit
TCTGTGTGGTTGTTTGTTGTGTTTG10.398406374501992No Hit
TTTTTTTTTTTTTTTTTTGTTTTTT10.398406374501992No Hit
TAAAATAAATTATATTATTATAACC10.398406374501992No Hit
ATTTTTTGTGTTGTTGTTGTTGGTT10.398406374501992No Hit
GTGGGGGGGGGGGGTTGGTTTTGGG10.398406374501992No Hit
TGGTGGGGGGGGGGGGGGTGGGCTG10.398406374501992No Hit
GGGGGTTGTTTTGGTGGGGGGTGGG10.398406374501992No Hit
ATTTATAAATTTTTTTTAATTTATG10.398406374501992No Hit
TGTTTTTTTTTTTTTTTTTTTTTTG10.398406374501992No Hit
TGTGGGGGGTGGGGGGGTTTTTTGG10.398406374501992No Hit
GCGGGGGTGGGGTGGTGGGGTTTTG10.398406374501992No Hit
TTTTTGTTTTTTGTGTTTTTTTGTT10.398406374501992No Hit
TTTTGTTTTTTTTTTTTTTTTTGGG10.398406374501992No Hit
TTTTTTTTTTTTTTTTTTTTTTAAA10.398406374501992No Hit
TTTTTTTTTTTTTTTTTTTTTTAAC10.398406374501992No Hit
ATTTAATATATAATAATATTAATTT10.398406374501992No Hit
TCCCCAAAACCGCCCCGCCCCCGCC10.398406374501992No Hit
TTTTTTTTTTTTTTATTTTTAGTTT10.398406374501992No Hit
CCCCCTACCCCCCACCCCCCCCTCC10.398406374501992No Hit
TTTTTTTTTTTTTTTTTTTTTTTGG10.398406374501992No Hit
TATTTTTTTTTTTTTTTTATTTTTT10.398406374501992No Hit
TTGGTTTTGGGGTGTGGGTGTGGGG10.398406374501992No Hit
GGGGGTTTGTGTTTTTTGTGGGGGG10.398406374501992No Hit
TATAATTTATTAACTTAATTCTTTT10.398406374501992No Hit
CCTGTCTCCCGCCGGTCTACCCCCA10.398406374501992No Hit
TTTTTTTGTTTGTGTTTTTTTTTGT10.398406374501992No Hit
TTTTTTTTTTTTTTTTTGTTTTTTT10.398406374501992No Hit
TTTATTTTTTTTTTTTTTTTTTTTT10.398406374501992No Hit
TATCTTATTCTATTCGCTTTTTTTT10.398406374501992No Hit
TTTTAATATAATTTTTATATTTTTG10.398406374501992No Hit
TTTTTTTTTTTTTTTTTTTTCGTAG10.398406374501992No Hit
TTTTTTTTTTTTTTTTTTTTTACCC10.398406374501992No Hit
TTTTTTTTTTTAAATAATAAAAATA10.398406374501992No Hit
TGTTTTTTTTTGTGGGTTTTTTTTG10.398406374501992No Hit
TTTTTCTTTTTTTTTTTTTTTTTAC10.398406374501992No Hit
TTTGGTTGTTTTTTTTGTGTTTTGT10.398406374501992No Hit
GGTGTGTGGGGGGGGTGGTTTTGGG10.398406374501992No Hit
TGTTGATGTTTGTCTTTATTATTTG10.398406374501992No Hit
TTTTTTTTTTTTTTTTTTTTTATTT10.398406374501992No Hit
TTTTTTTTTTTTTTTTTTTTGTTCT10.398406374501992No Hit
TTGGGGGGGGTTGTGTGGTTTGGGG10.398406374501992No Hit
TTTTTTTTTTTTTTTTTTTTGTTTG10.398406374501992No Hit
TCCCCAAAACCCCCCAGCCCCCCCC10.398406374501992No Hit
TTTTTTTTTTTTTTTTTTTTTTGTC10.398406374501992No Hit
TTTTTTTTTTTTTTTTTTTTTTGTG10.398406374501992No Hit
TTTTTTTTTTTTTTTTGGGGGGGGG10.398406374501992No Hit
TTTTATATAATATTAATTTATATTT10.398406374501992No Hit
ATAATAATATTACTTCCCCTCAAAA10.398406374501992No Hit
GCAACTGCGACCCACCCCCCCCACC10.398406374501992No Hit
TTTTGTGTTTTGTTTGGTGTGGGGG10.398406374501992No Hit
GTGTTTGTGTTGGGTTTTTTTTTGT10.398406374501992No Hit
TGTTGGTTGGGGGGGGGGGGTGGGG10.398406374501992No Hit
TTTTTTTTTTTTTCGGTTTTTTTGT10.398406374501992No Hit
TTCGGGTGTGTGTGTGGTGTGTTGG10.398406374501992No Hit
TTTTGGTTTCTGGTTGTTTTGTTTT10.398406374501992No Hit
CCCCCCGGTGGGGGGGGGTTGGGTG10.398406374501992No Hit
TGGGGGGTTTGGGGTGTTTTTTACT10.398406374501992No Hit
TTTTTTTTTTTTGTGGGTGTTTTTG10.398406374501992No Hit
CGGGGTTGGGGTGGGTGTGTTTGGG10.398406374501992No Hit
TTTTTTTTTTTTTTTTTTTTTTAGA10.398406374501992No Hit
TCCCCAACACCCCCCCCCCCCCCCC10.398406374501992No Hit
TTGGTGGTGGTGTGTGTGTTTTTGG10.398406374501992No Hit
TTTTGGTGGGTGGGGGGTTGGTTTG10.398406374501992No Hit
TTGGTTTGTTGGTTGTTGTTTTGGG10.398406374501992No Hit
TTTGGGTTGTTTTTTTGGGGTTTGG10.398406374501992No Hit
GGGGGGGGGGGGGGGGGGGGGGGGG10.398406374501992No Hit
TGTGGTGGGGGGGGGGGGGGGGGGG10.398406374501992No Hit
TTTTTTTTTTTTTTTTTTTTTTGAA10.398406374501992No Hit
GTGGGGGGGTGGGGGGGGGGTGGGG10.398406374501992No Hit
TTTTTTTTTTTTTTTTTTTTTGGGG10.398406374501992No Hit
GTTGTTGTTTTGGTGCTTTGGAGTT10.398406374501992No Hit
TTAAACCCCCCACCAAAACCCCCAA10.398406374501992No Hit
TTTTTTTTTGTTTTTGTTTTTTTTT10.398406374501992No Hit
GGGGTTTTTTGTTTTTTTTTTGGGG10.398406374501992No Hit
TTTTTTTTTTTTTTTTTTTTTTGAT10.398406374501992No Hit
TTTTTTTTCTTTTTTTTTTTTTTTT10.398406374501992No Hit
TTTGGGGTTTGGTGTGGGTTTTGGG10.398406374501992No Hit
GGTTTTTTTTTTTTTTTTTTTGGGG10.398406374501992No Hit
TTTTTTTTTTTTTTTTTTTTGTTTT10.398406374501992No Hit
TCCCCTAAACCCCCCCTCCCCCGCC10.398406374501992No Hit
TTTTTTTGTTTTTTTTTTTTTGGGG10.398406374501992No Hit
TGTTGGGGGGGGGGGGGGGGGGGGG10.398406374501992No Hit
TGTTTTTGGGGTTTTGTTTGTGTGT10.398406374501992No Hit
TTTTTTAATTTTTTTTTTTTTTTCC10.398406374501992No Hit
TTTTTAAGTTTAAGTAAATAAAAAA10.398406374501992No Hit
TTTTTTTTTTTTTTTTGGTTTTTTT10.398406374501992No Hit
TTTTTTTTATTTTTTTTTTTTTTTT10.398406374501992No Hit
TATTTTTTTTTTTTTTTTTTTTTTT10.398406374501992No Hit
TTTTTTTTTTTTTTTTTTTTTACGA10.398406374501992No Hit
TTTGGGTGGTTGTTGGTGTTTGTGG10.398406374501992No Hit
ATTTTTTTTTTTTTTTTTTTTTTTT10.398406374501992No Hit
TCCCCACAACCCCCCCCCCCCCACC10.398406374501992No Hit
TTTATCCTGCTTCTATCTTTCCTAT10.398406374501992No Hit
GTTTTTGTTGTTGGTTTGTTTGGGG10.398406374501992No Hit
TTTTTTCTTTTTTTTTTTTGTTTTT10.398406374501992No Hit
TCCCCACACCCCCCCCCGCCCCTCC10.398406374501992No Hit
TTTTTTTTTTTCTTTTTTTTTTTGT10.398406374501992No Hit
TTTTTTTTTTTTTTTTTTTTTTTAG10.398406374501992No Hit
TCACAAAAACCCCCCATCCCCCTCC10.398406374501992No Hit
TTTTTGGTGTTGTTTGTTGGTGGGG10.398406374501992No Hit
TAGTGTTTTTTATATCTTTTTATTT10.398406374501992No Hit
CTGGTTGTGGGGTGTGGGTTGGGGG10.398406374501992No Hit
TTTTTTTTTTTTTTTTTTTTTAATT10.398406374501992No Hit
AAATTATAAATATAATATAAATAAT10.398406374501992No Hit
TTTTTTTTTTTTTTTTTTTTCCAAC10.398406374501992No Hit
TTTTTATTTTTTTTTTTTTTTTTAG10.398406374501992No Hit
TTTGTTTTTTTTTTTTTTTTTTTCG10.398406374501992No Hit
TTTTTTTTTTTATATTTTTTTTTTT10.398406374501992No Hit
GTTTTTGTGTTTTTTTTTTTTTTTG10.398406374501992No Hit
TTGGGTGTTTGGGGGGGGTTGGGGT10.398406374501992No Hit
TTTTTTTTGTTTTTTTTTTTTTCTT10.398406374501992No Hit
TTAATTTTTTTTTTTTTTTTTTTGA10.398406374501992No Hit
TTTTTTGTTTGGTGTTGTTTTGGGG10.398406374501992No Hit
TTTGTGAATATAATTCTTCCGCCCC10.398406374501992No Hit
TGGTGTGTTTTTTATTTTAAGGTCT10.398406374501992No Hit
TTGGGGGGTTGGTTGGGGTTGGGGG10.398406374501992No Hit
TTTTTTTTTTTTTTTGTTTTGTTTT10.398406374501992No Hit
TTTTTTTTTTTTTTTTTTAAATTTA10.398406374501992No Hit
TTGTTTTTTTTTTTTTTTTTTTTTT10.398406374501992No Hit
TTTTGTTTGGTGGGTTTGGGGGGGG10.398406374501992No Hit
TTTTTTTTGTTTTTGTTTTTGTGGG10.398406374501992No Hit
TTTTTTTTTTTTTTTTTTTTTAAAT10.398406374501992No Hit
TGTGTGGGGGGGGGGGTGTGTTTTT10.398406374501992No Hit
TTTTTTTTTTTGTTTTTGTTTTTGT10.398406374501992No Hit
ATAACGATCATTTTGGTATTTTATA10.398406374501992No Hit
TTTTATTTTTTTTTTTTTTTTAAAA10.398406374501992No Hit
TGCGGGGGGGGGGGGGGGGGGGGGG10.398406374501992No Hit

[OK]Adapter Content

Adapter graph

[OK]Kmer Content

No overrepresented Kmers

Produced by FastQC (version 0.11.5)