FastQCFastQC Report
Wed 28 Aug 2019
H2HY7BGXC_n02_Lu_RNAseq_Aug2019_Sample_13.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameH2HY7BGXC_n02_Lu_RNAseq_Aug2019_Sample_13.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences178
Sequences flagged as poor quality0
Sequence length25
%GC19

[FAIL]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TTTTTTTTTTTTTTTTTTTTTTTTT3519.662921348314608No Hit
TTTTTTTTTTTTTTTTTTTTTTTGT84.49438202247191No Hit
TTTTTTTTTTTTTTTTTTTTTTTTA42.247191011235955No Hit
TTTTTTTTTTTTTTTTTTTTTTTTC31.6853932584269662No Hit
TTTTTTTTTTTTTTTTTTTTTTTTG31.6853932584269662No Hit
TTTTTTTTTTTTTTTTTTTTTTTCC21.1235955056179776No Hit
TTTTTTTTTTTTTTTTTTTTTTAAT21.1235955056179776No Hit
ATAATAATAATTTTATTTATTTACC10.5617977528089888No Hit
TTTATTTTTTTGTTTGTTTTGGCTT10.5617977528089888No Hit
TTTTATGTTTGTGTTGTTGTTTTTG10.5617977528089888No Hit
TAATTTTTTTAATTTTTATTTTAAA10.5617977528089888No Hit
TTGTTTTTTGTTTTGTTTTTTTTTG10.5617977528089888No Hit
TTTTTTTTTTTTTTTTTTTTTAGCC10.5617977528089888No Hit
TTTTTTTTTTTCTTTTTTTTTTTTC10.5617977528089888No Hit
ATTTTTTATTATTTTATTAAATCCC10.5617977528089888No Hit
TTTTTTTTTTTTCTTTTTTTTTTTA10.5617977528089888No Hit
GTTCAAACAACACCCACCCCCCCGC10.5617977528089888No Hit
TTTTTTTTTTTATTTTTTTTTTTGT10.5617977528089888No Hit
TTTTTTGTTTTTTTTTTTTTTTCCT10.5617977528089888No Hit
CCCGTGTGCGGGGGGGGGGGGGGGG10.5617977528089888No Hit
TTTTTTTTTTTTTTTTTAATAATTT10.5617977528089888No Hit
TTTTTTTTTTTTTTTTTTTTTACCT10.5617977528089888No Hit
TTTTTTTGTTTCGTGTGGTGTTTGT10.5617977528089888No Hit
TTTTTTTTTTTTTTTTTTTTTGTTA10.5617977528089888No Hit
AATAATCAATATATTTAATATACCA10.5617977528089888No Hit
TTTTTTTTTTTTCTTTTTTTTCCTA10.5617977528089888No Hit
TTTTGTTGGGTTGTGGGTTTTGGGG10.5617977528089888No Hit
TTGGTTTTTTGTTTTTTTTTTTGTT10.5617977528089888No Hit
TTTTTTTTTATTTTTTTTTTTTTTC10.5617977528089888No Hit
TCCCCTCACCCCCCCCCCCCCATGC10.5617977528089888No Hit
TTTGTTTTTTTTTTTTTTTTTTGGG10.5617977528089888No Hit
AATTTATATTAATTTATTTTATTTT10.5617977528089888No Hit
TTTTTTTTTTTGTTTTTGTTTTTTT10.5617977528089888No Hit
GGGGGGGGGGGGGGGGGGGGGGGGG10.5617977528089888No Hit
TTTGTTTTTTTTTTTTTTTTTGTGT10.5617977528089888No Hit
TTTTTTTTTTTTGTTGGTGGTTCTG10.5617977528089888No Hit
TGTGTTGTTGTTGTTGGTTTTTGTG10.5617977528089888No Hit
TTTTTTTTTTTTTTTTTTTTTGACC10.5617977528089888No Hit
TTTGGGGGGTGGGGGGGTGGTTGGG10.5617977528089888No Hit
TGTGGGGGGGGGGGGGGGGGGGGGG10.5617977528089888No Hit
TTTTTTTTTTGTTTTTTTTTTTTGG10.5617977528089888No Hit
TTTTTTTTTTGGTTTTTGTTTTGTT10.5617977528089888No Hit
TTTTTTTTTTTTTTTTTTTTTTATT10.5617977528089888No Hit
TGTTTTTTTTTGTCCGTGTGTTTTT10.5617977528089888No Hit
TTTTTTTTTTTTTTTTTTAATGCAA10.5617977528089888No Hit
TGTTTTTTTTTTTTTTTTTTTGTTG10.5617977528089888No Hit
TTTTTTTTTTTTTTGGTTTTTTTGT10.5617977528089888No Hit
TATTTTTTTTTTTTTTTTTTTACGT10.5617977528089888No Hit
TGTTTTTTGTTTTTTTTTTTTTGAA10.5617977528089888No Hit
ATAATTTAATATATTATTAATATTA10.5617977528089888No Hit
TTGTGGTGTTTGGTGTGGTGTTTGT10.5617977528089888No Hit
TTTTTTTATTTTTTTTTTTTTTTTA10.5617977528089888No Hit
TAGTTTTTTATTTATCTTTTTAGAT10.5617977528089888No Hit
TTGGTGGGGGTGGGGTGGGTGGGGG10.5617977528089888No Hit
GCCCCAAAAACCCCCCCCCCCCCCC10.5617977528089888No Hit
TTTTTTTTTTTTATTTTTTTTACTT10.5617977528089888No Hit
TTTTTTTTATTATTTTTATTTTTTT10.5617977528089888No Hit
CGCGTGTGGGGGGGGGGGGGGGGGG10.5617977528089888No Hit
TATTTTTTTTTATTTTTTATTTTAC10.5617977528089888No Hit
TTTTTTGTTGTGTTTTTTTTTTTGT10.5617977528089888No Hit
TCCCCTCACCCCCCCCCCCCCCTCC10.5617977528089888No Hit
GTGGTGTTGGTGGTTGGTGGGTGGT10.5617977528089888No Hit
GTGTGGGTGTTGGGGGGGTGTGGGG10.5617977528089888No Hit
TTTTTTTTTTTTTTTTTTTTTTGGG10.5617977528089888No Hit
GTTTGGGGGGGGTGGGGGGGGGGGG10.5617977528089888No Hit
TTTTGTTGTTGTGTGGTTTTTGTGA10.5617977528089888No Hit
TTTTTTTTTCTTTTTTTTTTTTTAA10.5617977528089888No Hit
TTTTTTTTTTTTTTTTTTTTATTTT10.5617977528089888No Hit
TTTTCTTTTTTTTTTTTTTTTTTCA10.5617977528089888No Hit
GGGTTTTTGTTTTTTTGTGGTTGGG10.5617977528089888No Hit
TTAAAATAATAATCCTCCCCGCCAC10.5617977528089888No Hit
TTTCTTTTTTTTTTTTTTTTTTGTA10.5617977528089888No Hit
GTCTGTGGTTGGGTGGTTGGTGGGG10.5617977528089888No Hit
TTATTATTTTTATTTTTGTTTTTTT10.5617977528089888No Hit
TTTTTTTTTTTTTTACTTTTCCTTT10.5617977528089888No Hit
CGTGGTGGGGGGGGGGGGGGGGGGG10.5617977528089888No Hit
CCCCCCCCCCCCCCCCCCCCCCCCC10.5617977528089888No Hit
TTTTTGTTTGTTTTTTTTTTGTTTT10.5617977528089888No Hit
TGTGTGTGCGGGTGTGGTGGGTTTG10.5617977528089888No Hit
TTTTTTTGTTGGTTGTTGTTTTTTG10.5617977528089888No Hit
TCCCCTAAACCCCACCTCCCCCTGC10.5617977528089888No Hit
TCCCCAAAACCCCCCCGCCCCCTCC10.5617977528089888No Hit
TTTTTTTTTTTTTGGGTTTTTTGGG10.5617977528089888No Hit
TGTTTTTTTTTTTTTTTTTTTTTTG10.5617977528089888No Hit
TTCTTCTTATTGGTTGTTGATTTTA10.5617977528089888No Hit
TTTTTTTTTTTTTTTTTTTTTTAAA10.5617977528089888No Hit
TATTTTTTTTATTTTTTTATTTTTT10.5617977528089888No Hit
TTGGGGGGGGTGGGGGGTGGGTTGG10.5617977528089888No Hit
TTGTTTAGTTATTGAAGTTATTTTA10.5617977528089888No Hit
TTTTTTTTTTTTTTTTTTTTTTAAC10.5617977528089888No Hit
CTGGGGGGGGGGGGGGGGGGGGGGG10.5617977528089888No Hit
TTTTTTGTTTTTTTTTTTTTTTTTG10.5617977528089888No Hit
TCCCCTAAAACCCACCCCCCCCTTC10.5617977528089888No Hit
TTGTTCTGGTTGTGTGTGTTGTTGT10.5617977528089888No Hit
TTTTTGTTTTTTTTTTTTTTTTTGT10.5617977528089888No Hit
GGGTGGGGGGGGGGGGGGGTGGTGG10.5617977528089888No Hit
TTTTTTTTTTTTTTTTTTTTTTAAG10.5617977528089888No Hit
TGTTTGGGGGGGGGGGGGGGGGGGG10.5617977528089888No Hit
TTATTTTTATTTTTTTAATAATATT10.5617977528089888No Hit
TTTTTTTTTTTTGTTGTTTTTTTTT10.5617977528089888No Hit
TTGTTTTTTGGTTTGTTTTTCTTTT10.5617977528089888No Hit
TTTTTTGTTTTTGTTTTTGTTTTTT10.5617977528089888No Hit
GGGTTTTGGGGGGGGGGGGGGTTTG10.5617977528089888No Hit
TTTTTTTGTTTTTTTTTTTTGGGGG10.5617977528089888No Hit
TTTTTTTTATTTTGTTTTTTTTTTT10.5617977528089888No Hit
TTTTTTTTGTTTTTTTGTTTTTTGA10.5617977528089888No Hit
TTTTTTTTTTTTTTTTTTTTGTTAT10.5617977528089888No Hit
TTTTTATAAATTTAAATTTTTTTTT10.5617977528089888No Hit
TTTTTTTTTTTTTTTTTTGGTTTGG10.5617977528089888No Hit
GTTTTTTTTTTTTTTTTTTTTTTTG10.5617977528089888No Hit
TTTTTTTTTTTTGTTGTTTTTTTTG10.5617977528089888No Hit
TTTTTTTTTTATTTTGTTTTTCTTC10.5617977528089888No Hit
TTTTTTATTTTTTTTATTTTTTTCG10.5617977528089888No Hit
TTTTTTTTTTTTTTTTTTTTTTCTT10.5617977528089888No Hit
CCTTCTTTGTGTTTGGCTGTGTTTG10.5617977528089888No Hit
TGTTTTTGGTTGGGTGTTGTTTTTT10.5617977528089888No Hit
TTTTGTTTTTTTTTGGTTGTTTTGG10.5617977528089888No Hit
CGGGGGGGGGGGGGTGGGGGTTGGG10.5617977528089888No Hit
CGGCGGGGGGGGGGGGGGGGGGGGG10.5617977528089888No Hit
TCTTTTTCTTTTTTTTTTTCCTTTG10.5617977528089888No Hit
TTTTTTTTTTTTTTTTTTTTTGGTT10.5617977528089888No Hit
TTTTTTTTTGTGTTTTTTTTTTTGT10.5617977528089888No Hit
TTTTTTTTTTTTTTTTTGTTTTTTT10.5617977528089888No Hit
TTTTTTTTTTTTTTTTTTTTTAAAT10.5617977528089888No Hit
TGTTTCGTTTTTTTTTTTTTTGTTT10.5617977528089888No Hit
TTTGGTTTTTTTTTGGGGGTGGGGG10.5617977528089888No Hit
TTTTTGTTTTTTTTTAACTATCACC10.5617977528089888No Hit
TTATTTTTTTATTTTTATTGGTATA10.5617977528089888No Hit

[OK]Adapter Content

Adapter graph

[OK]Kmer Content

No overrepresented Kmers