FastQCFastQC Report
Wed 28 Aug 2019
H2HY7BGXC_n02_Lu_RNAseq_Aug2019_Sample_11.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameH2HY7BGXC_n02_Lu_RNAseq_Aug2019_Sample_11.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences33
Sequences flagged as poor quality0
Sequence length25
%GC44

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TTTTTTTGTTTTGTTTGTTGTTGGG13.0303030303030303No Hit
TGTGTTTTGGGGGGGGTTTTTTTGG13.0303030303030303No Hit
TTTTTTTTTTTTTTTGTGTGGGGGG13.0303030303030303No Hit
TTTTGGGCTGGCGGGGGTTTGGGGG13.0303030303030303No Hit
GTTTGGTGGTCTTGTTGTGTTGGGT13.0303030303030303No Hit
TTTTTTTTTTTTTTTTTTTTTGGGG13.0303030303030303No Hit
TTTGTTTTGTTGTGGTTGTTTTTTT13.0303030303030303No Hit
GTTTTGGGGGGTGGTTGGTTGTTGG13.0303030303030303No Hit
GGCTTTTTTTTTTTTTTTTTTATTT13.0303030303030303No Hit
TTTGTTTTTTGTTGTTTTTGTTTGG13.0303030303030303No Hit
ATACACTCTGTTTTAAAATTTCAAA13.0303030303030303No Hit
TTTTTTTTTTTTTTTTGTTTTGTTT13.0303030303030303No Hit
TTGGTGGTGTGTGTTGTGGTGGTGG13.0303030303030303No Hit
TGTGGGGGGTGTGGGTGGTTTTTGG13.0303030303030303No Hit
TTTTTTTTTTTTGTTGTTTTTGTTT13.0303030303030303No Hit
TTTTGTTTTTTTGTTTTTTTGGGGG13.0303030303030303No Hit
GTGGGGGGTGTGGTTGGGGGTGTGG13.0303030303030303No Hit
TTTTTTTTGTGTTTTTGTTTTGGTG13.0303030303030303No Hit
CCCCCTCAACCCCCCCCGCCGATTC13.0303030303030303No Hit
TGGCGCGTCCCGGCGGGGGGGGTGG13.0303030303030303No Hit
GGGGGGGGGGGGGGGGGGGGGGGTT13.0303030303030303No Hit
TTTTGTTTTTTTTTTGTTTTTTGGG13.0303030303030303No Hit
GGGTGGGGGGGGGGGGGGGTGGTTT13.0303030303030303No Hit
GGGGTTTGGGGTTTGGGGGTGTTTG13.0303030303030303No Hit
TTGTTATGAATTGCTTTTATTTAGA13.0303030303030303No Hit
TGTGCTGTGTGGGTGCGCGTGGGGG13.0303030303030303No Hit
GGGGGGGTGGGGGGGGGGGGGGGGG13.0303030303030303No Hit
ATTTTTTTTTTTGTTTCCTTTTTTT13.0303030303030303No Hit
TGGTTTTTTTTTTTTTTTTTTTTTT13.0303030303030303No Hit
GGGTTTTGGTGTGGGGTGGGGTTTG13.0303030303030303No Hit
TGTTGTGTTTGGTTGTGGTTTGGGG13.0303030303030303No Hit
GGGTTTCCTGGCCCGGGCGGCGGGG13.0303030303030303No Hit
ATGAATCTAACTTTTATATTTAATC13.0303030303030303No Hit

[OK]Adapter Content

Adapter graph

[OK]Kmer Content

No overrepresented Kmers

Produced by FastQC (version 0.11.5)