H2HY7BGXC_n01_undetermined.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	H2HY7BGXC_n01_undetermined.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	92516867
Sequences flagged as poor quality	0
Sequence length	50
%GC	50

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG	10415490	11.257936350136024	No Hit
CCGAGCCCACGAGACGAACGGTAATCTCGTATGCCGTCTTCTGCTTGAAA	253534	0.27404084057450845	RNA PCR Primer, Index 12 (96% over 28bp)
CCGAGCCCACGAGACGAACGGTACTCTCGTATGCCGTCTTCTGCTTGAAA	212476	0.22966190586631083	Illumina PCR Primer Index 12 (96% over 27bp)
GCCAATAGGCAGCTTTCTTAACTATCCTAACAAGCCTTGGACCAAATGGA	109488	0.11834382588852689	No Hit
TCAGAAGGAAAGGAGAATGTTTTGTGGACCACTTTGGTTTTCTTTTTTGC	105087	0.11358685546496079	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
CCGACCG	6980	38.318226	21
CTCTTAT	218010	35.799694	1
TCTTATA	211780	35.6685	2
CGTCTTC	239000	35.264366	35
CGGCCTA	16155	35.013943	10
CTTGAAA	128850	34.70223	44
GCCGTCT	242380	34.37669	33
ATCCGAC	6770	34.305553	19
GTCTTCT	246415	34.305332	36
CTGCTTG	242320	34.24938	41
TGCCGTC	253420	33.80965	32
TCTTCTG	251110	33.51439	37
TCCGACC	8140	32.96551	20
ATGCCGT	241765	32.892006	31
CCGTCTT	254145	32.789375	34
TACTCGG	30080	32.788837	3
TATACAC	186765	32.499397	5
ACCTGCG	17200	32.405487	5
ACACGTG	16200	32.3553	22
TCTGCTT	256745	32.322063	40