H2HY7BGXC_n01_S9.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	H2HY7BGXC_n01_S9.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	9698544
Sequences flagged as poor quality	0
Sequence length	50
%GC	43

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTCTTATACACATCTCCGAGCCCACGAGACAAGCAACGATCTCGTATGCC	48758	0.5027352559311996	No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG	22799	0.23507652282651914	No Hit
CTCTTATACACATCTCCGAGCCCACGAGACAAGCAACGCTCTCGTATGCC	20052	0.206752683701801	No Hit
TCAGAAGGAAAGGAGAATGTTTTGTGGACCACTTTGGTTTTCTTTTTTGC	19972	0.20592781761880957	No Hit
ACAAAGGTGCTGCTTTTACAGGGAAGCTTATTCTGTTTTAAACATTGAAA	18877	0.19463746310786445	No Hit
TCTCTTATACACATCTCCGAGCCCACGAGACAAGCAACGATCTCGTATGC	18409	0.1898119965223646	No Hit
GCCCTTGAGAAGGATTATGAGGAGGTTGGTGTGGATTCTGTTGAAGGAGA	15111	0.15580689225104305	No Hit
CTGGACCTGCGGCCTAAGAAGACACGTGCCATGCGCCGCCGGCTCAACAA	11501	0.11858481025605493	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
GTATGCC	10210	38.351933	44
ATACCGC	960	37.353344	35
TATACCG	970	36.741455	34
CTACTCG	10250	36.429375	2
GCTACTC	20765	35.784325	1
TACTCGG	10165	35.673138	3
CTACTTG	11300	35.517315	2
GTCGAAT	1175	35.011456	10
GACACGT	2100	34.88764	21
GCTACTT	11810	34.74743	1
ACGTGCC	2125	34.68427	24
TCCGACG	875	34.443356	41
AGGCTGA	43170	34.41271	11
CCGTAAC	1255	34.180927	41
TACTTGG	11855	34.15134	3
CGTAACC	1295	34.144382	42
TGCCGTA	1610	33.88745	39
GAATCGC	7975	33.712208	25
CGGAACT	1210	33.64187	2
AGAATCG	8335	33.33838	24