H2HY7BGXC_n01_S5.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	H2HY7BGXC_n01_S5.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	9221893
Sequences flagged as poor quality	0
Sequence length	50
%GC	44

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTGGACCTGCGGCCTAAGAAGACACGTGCCATGCGCCGCCGGCTCAACAA	33163	0.3596116328827498	No Hit
TCAGAAGGAAAGGAGAATGTTTTGTGGACCACTTTGGTTTTCTTTTTTGC	31598	0.34264114753879704	No Hit
GCCAATAGGCAGCTTTCTTAACTATCCTAACAAGCCTTGGACCAAATGGA	24503	0.2657046660593438	No Hit
CTCTTATACACATCTCCGAGCCCACGAGACGTCTACCAATCTCGTATGCC	24184	0.2622455064269342	No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG	21772	0.23609035585210109	No Hit
GCCTTCGGAGCGTTCTCTGTCCTACTTCTGACTTTACTTGTGGTGTGACC	17343	0.1880633401406848	No Hit
GCTGGAGCTGGCAAGGTCACCAAGTCTGCCCAGAAAGCTCAGAAGGCTAA	15576	0.16890241515489282	No Hit
CAGAAGGAAAGGAGAATGTTTTGTGGACCACTTTGGTTTTCTTTTTTGCG	13389	0.1451871107157717	No Hit
CTCTTATACACATCTCCGAGCCCACGAGACGTCTACCACTCTCGTATGCC	10950	0.11873917860465306	No Hit
GCAGGAAGGGGGGTCGCCGTGGTCGCCGTCTGTGAACAAGATTCCTCAAA	10199	0.11059551439167642	No Hit
TCTCTTATACACATCTCCGAGCCCACGAGACGTCTACCAATCTCGTATGC	9534	0.1033844135905719	No Hit
CCGGAACTGGTCGAATGAGGCACCTAAAAATTGTATACCGCAGATTCAGG	9515	0.10317838213911178	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
GACACGT	5525	40.178566	21
AGACACG	5645	40.025993	20
ACGTGCC	5460	39.97188	24
CGGCCTA	5755	39.45016	10
ACACGTG	5610	39.412933	22
ATACCGC	1330	39.03706	35
CACGTGC	5645	38.895756	23
ATGCGCC	4985	38.437126	31
GCGTTCT	2400	38.407597	10
ACCTGCG	5855	38.256977	5
TATACCG	1355	38.15446	34
CGTTCTC	2490	37.99083	11
CGGAGCG	2465	37.9371	6
GCGGCCT	6420	37.522854	9
TCGGAGC	2480	37.441265	5
GTCGAAT	1710	37.309227	10
CGGAACT	1730	37.13788	2
GAGCGTT	2480	37.08014	8
TGCGGCC	6420	36.7347	8
GCGCCGC	4870	36.590878	33