H2HY7BGXC_n01_S4.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	H2HY7BGXC_n01_S4.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	6487837
Sequences flagged as poor quality	0
Sequence length	50
%GC	43

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
TCAGAAGGAAAGGAGAATGTTTTGTGGACCACTTTGGTTTTCTTTTTTGC	16948	0.2612272780589278	No Hit
CTGGACCTGCGGCCTAAGAAGACACGTGCCATGCGCCGCCGGCTCAACAA	16541	0.2549540008480484	No Hit
CTCTTATACACATCTCCGAGCCCACGAGACTCTATCCGATCTCGTATGCC	16226	0.2500987617290632	No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG	14071	0.21688276077219573	No Hit
GCCTTCGGAGCGTTCTCTGTCCTACTTCTGACTTTACTTGTGGTGTGACC	13556	0.20894483014909285	No Hit
GCTGGAGCTGGCAAGGTCACCAAGTCTGCCCAGAAAGCTCAGAAGGCTAA	11333	0.1746807140808254	No Hit
GCCAATAGGCAGCTTTCTTAACTATCCTAACAAGCCTTGGACCAAATGGA	11243	0.17329350290397247	No Hit
GCCCTTGAGAAGGATTATGAGGAGGTTGGTGTGGATTCTGTTGAAGGAGA	6890	0.10619872231685229	No Hit
CCTACAAGCCTCAGAGTACTTCGAGTCTCCCTTCACCATTTCCGACGGCA	6857	0.10569007821867288	No Hit
CCTTTGGGTCGCTTTGCTGTTCGTGATATGAGACAGACAGTTGCGGTGGG	6602	0.1017596465509229	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
GACACGT	2770	39.07822	21
AGACACG	2830	38.71617	20
ATACCGC	705	38.69414	35
CGGCCTA	2945	38.395805	10
TATACCG	715	38.152966	34
TCGGAGC	1815	37.945534	5
CGGAGCG	1810	37.92879	6
GCGTTCT	1850	37.3391	10
ACGTGCC	2905	36.959248	24
ACACGTG	2935	36.731396	22
GAGCGTT	1885	36.295685	8
ATGCGCC	2660	36.14035	31
TCCGACG	1000	36.077774	41
CACGTGC	2995	35.848618	23
CGTTCTC	1945	35.51534	11
ACCTGCG	3160	35.512077	5
GCGGCCT	3455	35.466072	9
TGCGCGA	600	34.838436	4
GTCGAAT	955	34.784	10
TGCGGCC	3430	34.313545	8