H2HY7BGXC_n01_S20.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	H2HY7BGXC_n01_S20.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	8296923
Sequences flagged as poor quality	0
Sequence length	50
%GC	41

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
TCAGAAGGAAAGGAGAATGTTTTGTGGACCACTTTGGTTTTCTTTTTTGC	43676	0.5264120204562582	No Hit
GCCAATAGGCAGCTTTCTTAACTATCCTAACAAGCCTTGGACCAAATGGA	26223	0.31605692857460527	No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG	21568	0.25995179176665856	No Hit
CAGAAGGAAAGGAGAATGTTTTGTGGACCACTTTGGTTTTCTTTTTTGCG	20117	0.2424633807014962	No Hit
GCAGGAAGGGGGGTCGCCGTGGTCGCCGTCTGTGAACAAGATTCCTCAAA	16844	0.20301502135189153	No Hit
CTGGACCTGCGGCCTAAGAAGACACGTGCCATGCGCCGCCGGCTCAACAA	12675	0.15276747777459185	No Hit
CTCTTATACACATCTCCGAGCCCACGAGACACGTTCGAATCTCGTATGCC	10149	0.12232245616838916	No Hit
GCAAAGAGGAGGCCATGCGCTGGTTCCAGCAGAAGTATGATGGGATCATC	9592	0.11560912400898503	No Hit
GCTGGATTGCAGAGTTAAGTTTATGATTATGAAATAAAAACTAAATAACA	9240	0.11136658734810484	No Hit
GCTGGAGCTGGCAAGGTCACCAAGTCTGCCCAGAAAGCTCAGAAGGCTAA	8737	0.1053040988809948	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
CGCAACG	110	42.00135	20
ATACCGC	1075	38.882866	35
TATACCG	1105	38.02631	34
CGCCGTC	2375	37.146458	24
CTACTCG	3225	36.98152	2
CGGAACT	1310	36.78646	2
TACTCGG	3265	36.663246	3
ACGTGCC	2135	36.581974	24
CGCATAC	540	36.25846	35
CGTAACC	780	35.817997	42
CACGTGC	2190	35.462326	23
CACGGGC	1460	35.418503	4
CGCCGTG	2520	35.35466	15
ATGCGCC	2085	35.23973	31
GCTACTC	6700	35.043495	1
ACCTGCG	2310	34.960037	5
TCCTAAC	4145	34.87205	25
GTCGAAT	1365	34.650414	10
CGGCCTA	2400	34.55674	10
CAATAGG	4490	34.50178	3