H2HY7BGXC_n01_S19.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	H2HY7BGXC_n01_S19.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	8132358
Sequences flagged as poor quality	0
Sequence length	50
%GC	40

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTCTTATACACATCTCCGAGCCCACGAGACCAGAACTGATCTCGTATGCC	38592	0.4745487102264805	No Hit
TCAGAAGGAAAGGAGAATGTTTTGTGGACCACTTTGGTTTTCTTTTTTGC	33994	0.4180091432275854	No Hit
TCTCTTATACACATCTCCGAGCCCACGAGACCAGAACTGATCTCGTATGC	18729	0.23030220755161046	No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG	18348	0.22561721950755242	No Hit
GCCAATAGGCAGCTTTCTTAACTATCCTAACAAGCCTTGGACCAAATGGA	16082	0.1977532223741257	No Hit
CTCTTATACACATCTCCGAGCCCACGAGACCAGAACTGCTCTCGTATGCC	14099	0.17336915074324077	No Hit
CAGAAGGAAAGGAGAATGTTTTGTGGACCACTTTGGTTTTCTTTTTTGCG	13779	0.16943425264849382	No Hit
GCAGGAAGGGGGGTCGCCGTGGTCGCCGTCTGTGAACAAGATTCCTCAAA	10089	0.12405995899344323	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
GTATGCC	8765	38.52662	44
ATACCGC	810	36.3942	35
TATACCG	805	36.34697	34
CTACTCG	2660	36.312996	2
CACGGGC	1195	36.27317	4
CGCAACG	125	35.200684	20
TACTCGG	2765	35.093605	3
ACGGTGC	495	34.665207	29
GTCGAAT	955	34.323586	10
CGGTGCG	510	33.645645	30
ACGGGCA	1300	33.51267	5
GCTACTC	5730	33.369293	1
GAATCGC	2095	33.184418	25
CTCACGG	1320	33.170982	2
CGCATAC	430	32.743412	35
TCACGGG	1345	32.718414	3
AGACACG	1080	32.38952	20
CGGGCAA	1340	32.348087	6
CGAATGA	1030	32.037685	12
CGCCGTC	1555	31.9749	24