H2HY7BGXC_n01_S18.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	H2HY7BGXC_n01_S18.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	7665723
Sequences flagged as poor quality	0
Sequence length	50
%GC	44

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GCCAATAGGCAGCTTTCTTAACTATCCTAACAAGCCTTGGACCAAATGGA	42370	0.5527202065610771	No Hit
TCAGAAGGAAAGGAGAATGTTTTGTGGACCACTTTGGTTTTCTTTTTTGC	32551	0.42463052734882284	No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG	20261	0.264306445719471	No Hit
CAGAAGGAAAGGAGAATGTTTTGTGGACCACTTTGGTTTTCTTTTTTGCG	17388	0.2268279195582726	No Hit
CTGGACCTGCGGCCTAAGAAGACACGTGCCATGCGCCGCCGGCTCAACAA	15743	0.20536875647606886	No Hit
GCCTTCGGAGCGTTCTCTGTCCTACTTCTGACTTTACTTGTGGTGTGACC	13297	0.17346048115748508	No Hit
GCAGGAAGGGGGGTCGCCGTGGTCGCCGTCTGTGAACAAGATTCCTCAAA	11653	0.1520143631592219	No Hit
GCAAAGAGGAGGCCATGCGCTGGTTCCAGCAGAAGTATGATGGGATCATC	10786	0.1407042753827656	No Hit
GCTGGAGCTGGCAAGGTCACCAAGTCTGCCCAGAAAGCTCAGAAGGCTAA	10187	0.13289027010237653	No Hit
GCCCTTGAGAAGGATTATGAGGAGGTTGGTGTGGATTCTGTTGAAGGAGA	7737	0.10092981444803054	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
CGGAGCG	1915	39.411034	6
AGACACG	2545	39.33398	20
GAGCGTT	1955	39.160778	8
ATACCGC	1015	38.796925	35
TATACCG	1035	38.25978	34
TCCTAAC	6085	38.10872	25
TCGGAGC	1985	38.020973	5
AATAGGC	6245	37.663998	4
GACACGT	2640	37.58496	21
CGTTCTC	2040	37.205063	11
CGCCGGC	2490	37.195732	37
CAATAGG	6515	37.116276	3
CGGCCTA	2775	37.02261	10
ACACGTG	2675	36.846695	22
ACCTGCG	2790	36.672325	5
CGAATGA	1275	36.233788	12
AACTATC	6470	36.147087	20
ATGCGCC	2575	35.881306	31
CCAATAG	6670	35.79146	2
ACGTGCC	2750	35.76178	24