H2HY7BGXC_n01_S16.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	H2HY7BGXC_n01_S16.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	8459794
Sequences flagged as poor quality	0
Sequence length	50
%GC	43

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
TCAGAAGGAAAGGAGAATGTTTTGTGGACCACTTTGGTTTTCTTTTTTGC	31044	0.3669592900252654	No Hit
GCCAATAGGCAGCTTTCTTAACTATCCTAACAAGCCTTGGACCAAATGGA	29436	0.3479517349949656	No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG	22138	0.2616848589930204	No Hit
CTCTTATACACATCTCCGAGCCCACGAGACTCTATCCGATCTCGTATGCC	18627	0.22018266638643919	No Hit
CAGAAGGAAAGGAGAATGTTTTGTGGACCACTTTGGTTTTCTTTTTTGCG	14083	0.16646977455952236	No Hit
CTGGACCTGCGGCCTAAGAAGACACGTGCCATGCGCCGCCGGCTCAACAA	11612	0.13726102550487637	No Hit
GCTGGAGCTGGCAAGGTCACCAAGTCTGCCCAGAAAGCTCAGAAGGCTAA	11192	0.13229636560890254	No Hit
GCCTTCGGAGCGTTCTCTGTCCTACTTCTGACTTTACTTGTGGTGTGACC	9601	0.11348976109820169	No Hit
TCTCTTATACACATCTCCGAGCCCACGAGACTCTATCCGATCTCGTATGC	9268	0.10955349503782243	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGCGAAC	45	2.3554094E-8	39.108257	31
AGACACG	2120	0.0	36.842598	20
TCGGAGC	1465	0.0	36.34638	5
ACGTGCC	2120	0.0	36.32369	24
GCGTTCT	1455	0.0	36.135677	10
ATACCGC	1000	0.0	36.079502	35
CGGAGCG	1465	0.0	36.045998	6
CTACTCG	5900	0.0	35.83891	2
TATACCG	1010	0.0	35.72228	34
GACACGT	2175	0.0	35.405155	21
TACTCGG	5930	0.0	35.063717	3
CGGCCTA	2320	0.0	34.894833	10
GAGCGTT	1520	0.0	34.880066	8
GTCGAAT	1160	0.0	34.70519	10
GCTACTC	11595	0.0	34.689175	1
CGTTCTC	1610	0.0	33.886528	11
ACACGTG	2290	0.0	33.81933	22
GTATGCC	4475	0.0	33.772038	44
ACACGTC	1260	0.0	33.696552	7
CACGTGC	2285	0.0	33.604465	23