H2HY7BGXC_n01_S15.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	H2HY7BGXC_n01_S15.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	8979579
Sequences flagged as poor quality	0
Sequence length	50
%GC	41

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
TCAGAAGGAAAGGAGAATGTTTTGTGGACCACTTTGGTTTTCTTTTTTGC	53347	0.5940924401912384	No Hit
GCCAATAGGCAGCTTTCTTAACTATCCTAACAAGCCTTGGACCAAATGGA	51840	0.5773099161998575	No Hit
CTCTTATACACATCTCCGAGCCCACGAGACGCCTCAATATCTCGTATGCC	36447	0.40588762568935577	No Hit
CAGAAGGAAAGGAGAATGTTTTGTGGACCACTTTGGTTTTCTTTTTTGCG	24600	0.2739549370855805	No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG	23275	0.25919923417345064	No Hit
TCTCTTATACACATCTCCGAGCCCACGAGACGCCTCAATATCTCGTATGC	19237	0.2142305335250127	No Hit
GCAGGAAGGGGGGTCGCCGTGGTCGCCGTCTGTGAACAAGATTCCTCAAA	16431	0.1829818524899664	No Hit
CTGGACCTGCGGCCTAAGAAGACACGTGCCATGCGCCGCCGGCTCAACAA	13583	0.15126544351355448	No Hit
GCCTGGGGCTCCCTCTCTGGTTTCCTATTTGCAGTTACTTGAATAAAAAA	12949	0.1442049788748448	No Hit
GCTGGATTGCAGAGTTAAGTTTATGATTATGAAATAAAAACTAAATAACA	11754	0.13089700530503715	No Hit
CTCTTATACACATCTCCGAGCCCACGAGACGCCTCAATCTCTCGTATGCC	11561	0.12874768405066653	No Hit
GCTGGAGCTGGCAAGGTCACCAAGTCTGCCCAGAAAGCTCAGAAGGCTAA	11448	0.12748927316080186	No Hit
GCAAAGAGGAGGCCATGCGCTGGTTCCAGCAGAAGTATGATGGGATCATC	11082	0.12341335824318712	No Hit
GCTCACGGGCAAGGATGTTAATTTTGAATTCCCAGAGTTTCAATTGTAAA	10947	0.12190994700308333	No Hit
CCCTGGGAGTGGGTGGAGGCAGCCAGGGCTTACCTGTACACTGACTTGAG	10258	0.1142369814887758	No Hit
GAGAATGAAGGAGGCTAAGGAGAAGCGCCAGGAACAAATTGCGAAGAGAC	9816	0.10931470172488042	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
CGCATAC	555	38.84596	35
CTACTCG	3380	37.8216	2
AGACACG	2270	37.798805	20
ATACCGC	1075	37.654953	35
GTATGCC	7615	37.4111	44
ACGTGCC	2280	37.150547	24
TATACCG	1100	36.999153	34
CGCCGTC	2435	36.32172	24
TCGGAGC	1395	36.27763	5
CACGGGC	1925	36.23359	4
ACGGGCA	1935	36.04654	5
CGGAGCG	1375	36.00539	6
GCTACTC	6760	35.901825	1
ATGCGCC	2250	35.882824	31
GACACGT	2370	35.8326	21
TACTCGG	3580	35.83158	3
TCCTAAC	7750	35.740726	25
TGCCGTA	1280	35.57731	39
CGTTCTC	1420	35.477665	11
CTCACGG	2000	35.424713	2