H2HY7BGXC_n01_S13.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	H2HY7BGXC_n01_S13.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	9068995
Sequences flagged as poor quality	0
Sequence length	50
%GC	42

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
TCAGAAGGAAAGGAGAATGTTTTGTGGACCACTTTGGTTTTCTTTTTTGC	30056	0.3314148921683163	No Hit
GCCAATAGGCAGCTTTCTTAACTATCCTAACAAGCCTTGGACCAAATGGA	27507	0.30330813943551627	No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG	23068	0.2543611502707852	No Hit
CTCTTATACACATCTCCGAGCCCACGAGACCTCTGGTAATCTCGTATGCC	22128	0.2439961649554333	No Hit
CTGGACCTGCGGCCTAAGAAGACACGTGCCATGCGCCGCCGGCTCAACAA	18355	0.20239287815243034	No Hit
GCCTTCGGAGCGTTCTCTGTCCTACTTCTGACTTTACTTGTGGTGTGACC	13762	0.15174779564880123	No Hit
CAGAAGGAAAGGAGAATGTTTTGTGGACCACTTTGGTTTTCTTTTTTGCG	13292	0.14656530299112527	No Hit
GCAGGAAGGGGGGTCGCCGTGGTCGCCGTCTGTGAACAAGATTCCTCAAA	12887	0.14209953804142575	No Hit
GCCTGGGGCTCCCTCTCTGGTTTCCTATTTGCAGTTACTTGAATAAAAAA	11502	0.12682772457146577	No Hit
TCTCTTATACACATCTCCGAGCCCACGAGACCTCTGGTAATCTCGTATGC	11051	0.12185473693612137	No Hit
GCTGGAGCTGGCAAGGTCACCAAGTCTGCCCAGAAAGCTCAGAAGGCTAA	10533	0.11614296843255509	No Hit
GCAAAGAGGAGGCCATGCGCTGGTTCCAGCAGAAGTATGATGGGATCATC	10509	0.11587833050960994	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
AGACACG	2830	38.8698	20
GACACGT	2820	38.695576	21
TATACCG	1140	38.59533	34
CGGAGCG	1920	38.39336	6
GCGTTCT	1970	37.410248	10
ATGCGCC	2600	37.144012	31
TCGGAGC	2000	37.077675	5
ATACCGC	1190	36.97368	35
GAGCGTT	2050	36.166164	8
ACGTGCC	3040	35.89524	24
CGGCCTA	3165	35.7274	10
CTACTCG	3710	35.64462	2
CGCCGGC	2620	35.182148	37
GTATGCC	5260	34.963764	44
ACCTGCG	3200	34.725937	5
ACACGTG	3150	34.641758	22
CGTTCTC	2170	34.46901	11
CACGTGC	3160	34.46251	23
TACTCGG	3870	34.2856	3
GTCGAAT	1455	34.170982	10