FastQCFastQC Report
Fri 16 Jul 2021
H2HN2AFX3_4.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameH2HN2AFX3_4.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences91651278
Sequences flagged as poor quality0
Sequence length91
%GC32

[WARN]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTATTTATATAGTGCTTTATATATGTCTCACATAGTTTAATCAATTGTCC7947040.8670953830016424No Hit
GCTTTATATATGTCTCACATAGTTTAATCAATTGTCCGTTTTTTTGAAAA2572020.2806311113304934No Hit
ATTTATATAGTGCTTTATATATGTCTCACATAGTTTAATCAATTGTCCGT2519500.27490069478354684No Hit
ATATATAACAATTGGGATTTAGTAGAAATTCTTTTAATTTCTTCTTTTTT2339960.2553112243563041No Hit
GTGTAAACCATTGCCTACTATTTATATAGTGCTTTATATATGTCTCACAT2297980.2507308190508811No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG2145200.23406111151008718No Hit
ATATAGTGCTTTATATATGTCTCACATAGTTTAATCAATTGTCCGTTTTT1940330.2117079043895056No Hit
CCTATATATTGTATCCTTTACATAAGAATTGCGTATAGATAGATACTATA1368140.1492766963926024No Hit
ATATATGTCTCACATAGTTTAATCAATTGTCCGTTTTTTTGAAAAAAAAA1345660.1468239209932239No Hit
ACTTTATATTTAATATCTAGATATTACATAATTTCCTCTCTAATAAAATA1293490.1411316926753602No Hit
ATATTATGTTTATCATTAAATATTGGCGATATAATAAAAAATTCTAGTCA1215570.13262990178925818No Hit
GATTAATATAGGTGAAACATAAGTAAATTTTTCTACTATTTCTAATCAAT1201440.13108818842657055No Hit

[WARN]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)