FastQCFastQC Report
Fri 16 Jul 2021
H2HN2AFX3_2.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameH2HN2AFX3_2.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences91651278
Sequences flagged as poor quality0
Sequence length8
%GC59

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GCTACGCT2263918924.70144387948415No Hit
CTCTCTAC2241359324.455297830107725No Hit
CAGAGAGG1959801521.383242468261056No Hit
TAGGCATG1873853620.44547158414965No Hit
GGGGGGGG67255847.338232643084367No Hit
GCTAGCTA1014390.11067930771243584No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)