FastQCFastQC Report
Sat 17 Aug 2019
H2HMJBGXC_n02_MG_Neg.7.16.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameH2HMJBGXC_n02_MG_Neg.7.16.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences5254
Sequences flagged as poor quality0
Sequence length151
%GC52

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG1843.5020936429387133No Hit

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TACAAGT100.0068939608144.99048145
CAGCGGA100.0068939608144.990489
TGGTGCG100.0068939608144.990487
CCGCCGC200.005970683428.998095100-104
Produced by FastQC (version 0.11.5)