FastQCFastQC Report
Sat 17 Aug 2019
H2HMJBGXC_n02_MG_30908.TR4_batch_7.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameH2HMJBGXC_n02_MG_30908.TR4_batch_7.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences19417240
Sequences flagged as poor quality0
Sequence length151
%GC41

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[FAIL]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CCGACGC119450.021.372734145
TACACTG163050.017.429075
TATACTG234550.016.6286035
GCCGACC52150.015.993632145
CTATACT137600.015.91181854
CCTATAC73750.015.6355833
TCTATAC142000.015.4240193
TATACCG18950.015.3024065
GTATAGA141300.014.5982251
GACGACA50500.014.361912145
CTACACT122450.014.2688694
CCGTATA29650.013.698308145
GTAAGAC103100.013.6465233
TACACAG201050.013.4857925
CCTACAC89350.013.4738753
CTTACAC124800.013.4238283
GTATTAG130100.013.3985521
GTGTAGG90000.013.3157421
CTAGGAC83750.012.9892893
ATACTGT302100.012.9819476
Produced by FastQC (version 0.11.5)