FastQCFastQC Report
Sat 17 Aug 2019
H2HMJBGXC_n01_MG_6331.TR2.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameH2HMJBGXC_n01_MG_6331.TR2.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences34793941
Sequences flagged as poor quality0
Sequence length151
%GC40

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[FAIL]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TCTCCGC175400.019.878998145
CACGAGC117450.019.812124145
TACACTG299150.015.5100455
CTCCGAC61600.014.94521145
TATACTG396050.014.42441755
GTGTAGG155450.013.7582351
CTACACT219300.013.3886834
TAGACTG242450.012.9774585
CTATACT254750.012.9484764
GTATAGG150450.012.8662071
GTGTAAG226650.012.7948661
GTATTAG249800.012.7119781
CCTACAC156150.012.442693
GTACTAG115350.012.3816951
GTATAAG237350.011.9736971
TACACCG42400.011.9689015
ATACTGT528150.011.9421926
TCTATAC244450.011.922233
TAGACAG457650.011.8967565
GTGTAGA217950.011.8419881
Produced by FastQC (version 0.11.5)