H2GKGBGX2_n01_tmd7.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	H2GKGBGX2_n01_tmd7.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	14700892
Sequences flagged as poor quality	0
Sequence length	75
%GC	48

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GATCGGAAGAGCACACGTCTGAACTCCAGTCACGTGGCCTTATCTCGTATGCCGTCTTCTGCTTGAAAAAAAAAA	2735854	18.610122433387037	TruSeq Adapter, Index 20 (97% over 44bp)
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG	133282	0.906625257841497	No Hit
GATCGGAAGAGCACACGTCTGAACTCCAGTCACGTGGCCTTATATCGTATGCCGTCTTCTGCTTGAAAAAAAAAA	17895	0.121727307431413	TruSeq Adapter, Index 20 (97% over 43bp)

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
TATGCCG	313375	68.03135	48
ATGCCGT	313780	67.89737	49
GTATGCC	314275	67.87928	47
GGCCTTA	310695	67.74427	36
TATCTCG	307435	67.74131	41
CGTATGC	315380	67.73864	46
TGCCGTC	314830	67.61855	50
CTTATCT	306020	67.56887	39
GCCTTAT	309590	67.54925	37
TTATCTC	307425	67.49103	40
GTGGCCT	312630	67.43091	34
GCCGTCT	315255	67.412994	51
TCGTATG	316265	67.41227	45
CGTGGCC	314475	67.41052	33
CTCGTAT	312855	67.400505	44
TCTCGTA	312210	67.07543	43
GTCACGT	319575	66.97742	29
TCACGTG	319120	66.96593	30
AGTCACG	321280	66.793015	28
ACGTGGC	318690	66.770195	32