H2GKGBGX2_n01_tmd4.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	H2GKGBGX2_n01_tmd4.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	17810352
Sequences flagged as poor quality	0
Sequence length	75
%GC	48

Per base quality graph

$Per base quality graph$

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GATCGGAAGAGCACACGTCTGAACTCCAGTCACCCGTCCCGATCTCGTATGCCGTCTTCTGCTTGAAAAAAAAAA	292312	1.641247741762768	TruSeq Adapter, Index 16 (97% over 40bp)
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG	95252	0.5348125629409234	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
TATGCCG	36895	66.482765	48
ATGCCGT	38280	64.06835	49
CGTATGC	39020	63.1274	46
GTATGCC	39005	63.02768	47
CGTCCCG	38025	62.882	35
CCGTCCC	38095	62.847954	34
CCCGATC	36495	61.57602	38
CCCGTCC	39130	61.503685	33
GTCCCGA	38420	61.166965	36
CACCCGT	39315	61.147682	31
TCACCCG	39845	60.446888	30
TGCCGTC	40830	60.168926	50
GTCACCC	40435	59.61893	29
ACCCGTC	40635	59.176994	32
GCCGTCT	42400	57.72177	51
CTCGTAT	41720	57.130993	44
TCGTATG	42945	57.124046	45
AGTCACC	42870	56.71612	28
TCCCGAT	42465	54.251896	37
TCTCGTA	43290	53.935215	43