H2GKGBGX2_n01_tmd10.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	H2GKGBGX2_n01_tmd10.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	18713800
Sequences flagged as poor quality	0
Sequence length	75
%GC	49

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG	174977	0.9350158706409173	No Hit
GATCGGAAGAGCACACGTCTGAACTCCAGTCACGAGTGGATATCTCGTATGCCGTCTTCTGCTTGAAAAAAAAAA	127011	0.6787023479998717	TruSeq Adapter, Index 7 (97% over 36bp)

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
TATGCCG	15840	63.160458	48
ATGCCGT	16570	60.398705	49
GTATGCC	17915	56.36455	47
CGTATGC	18720	53.628036	46
TGCCGTC	18850	53.093616	50
AGGGGGG	9240	52.8081	1
TATCTCG	18180	52.563854	41
GCCGTCT	20740	48.24007	51
TCGTATG	22195	45.355774	45
ATATCTC	22755	42.238213	40
TGGATAT	24755	39.313477	37
CTCGTAT	25465	39.15224	44
CCGTCTT	26290	38.200615	52
GTGGATA	25680	37.81679	36
GGATATC	25820	37.464268	38
GATATCT	25870	37.218502	39
CTTGAAA	27745	36.32029	62
TGAAAAA	28795	35.247383	64
CTGCTTG	30365	33.049667	59
TCTCGTA	30435	32.656708	43