H2GJMBGX2_n01_mb14.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	H2GJMBGX2_n01_mb14.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	29530124
Sequences flagged as poor quality	0
Sequence length	50
%GC	40

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GATCGGAAGAGCACACGTCTGAACTCCAGTCACGCCAATATCTCGTATGC	815572	2.761830597121773	TruSeq Adapter, Index 6 (100% over 50bp)
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG	76700	0.25973477117806887	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
CGTATGC	88635	42.85911	44
TCGTATG	89215	42.498955	43
CTCGTAT	88895	42.438667	42
TCTCGTA	89020	42.36665	41
ATCTCGT	89815	41.98617	40
CGCCAAT	89970	41.97348	33
TATCTCG	89845	41.96452	39
ACGCCAA	90615	41.735542	32
GTCACGC	91700	41.40987	29
GCCAATA	91930	41.021145	34
CACGCCA	92345	40.99627	31
AGTCACG	93070	40.89507	28
TCACGCC	92610	40.881405	30
CAATATC	92885	40.504856	36
CCAATAT	93460	40.427483	35
ATATCTC	95360	39.555622	38
CAGTCAC	98145	38.96422	27
CCAGTCA	98145	38.90594	26
TCCAGTC	99200	38.56079	25
AATATCT	99060	38.142258	37