H2GJMBGX2_n01_mb13.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	H2GJMBGX2_n01_mb13.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	29188620
Sequences flagged as poor quality	0
Sequence length	50
%GC	40

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GATCGGAAGAGCACACGTCTGAACTCCAGTCACACAGTGATCTCGTATGC	710578	2.434435064076342	TruSeq Adapter, Index 5 (100% over 50bp)
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG	67915	0.23267629644704	No Hit
CACTGTAGGACGTGGAATATGGCAAGAAAACTGAAAATCATGGAAAATGA	38947	0.1334321389637468	No Hit
CACTGAAGGACCTGGAATATGGCGAGAAAACTGAAAATCACGGAAAATGA	35086	0.12020438102246697	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
CGTATGC	81410	43.111366	44
TCGTATG	81685	42.841972	43
TCTCGTA	79425	42.77526	41
CTCGTAT	80530	42.75138	42
GATCTCG	78555	42.72722	39
ATCTCGT	79040	42.47661	40
AGTGATC	80830	41.521137	36
GTGATCT	81625	41.06028	37
GTCACAC	86580	40.67717	29
TGATCTC	82675	40.57087	38
CCAGTCA	88160	40.00825	26
CAGTCAC	88290	39.999245	27
CGTCTGA	89240	39.784946	16
ACGTCTG	89740	39.54455	15
TCCAGTC	89375	39.50853	25
AGTCACA	89705	39.323956	28
GAACTCC	90475	39.18144	21
ACACGTC	92175	38.57774	13
ACACAGT	91770	38.352463	32
TCTGAAC	92680	38.341225	18